View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0558_high_1 (Length: 408)
Name: NF0558_high_1
Description: NF0558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0558_high_1 |
 | |
|
| [»] chr6 (1 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 13 - 408
Target Start/End: Complemental strand, 33214803 - 33214407
Alignment:
| Q |
13 |
cagacaaacaacagaaagtccttatcataccttttcctgt-atatcatttctcttgttattatttatttggatatatgaaaatttatactgttattctac |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33214803 |
cagacaaacaacagaaagtccttatcataccttttcctgttatatcatttctcttgttattatttatttggatatatgaaaatttatactgttattctac |
33214704 |
T |
|
| Q |
112 |
tttctagtcttttttggaaagtatactgtttctgattttatttttggataatttatttaactataacaacttagattaatttatttgtagaattagtaaa |
211 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
33214703 |
tttctagtcttttttggaaactatactgtttctgattttatttttggataatttatttaactataacaacatagattaatttatttgtagaattagtaaa |
33214604 |
T |
|
| Q |
212 |
gatacatatctgtagttttaagcattgagataagcatacatataaaatcatatgtgctgtttacttgatttgatcaaatacataacttacactgtaatcc |
311 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
33214603 |
gatacatatctgtagttttaagcaatgagataagcatacatataaaatcatctgtgttgtttacttgatttaatcaaatacataacttacactgtaatcc |
33214504 |
T |
|
| Q |
312 |
taaacttctttttatgaatgagtaannnnnnngacttaatcaccaatgagtgattaaaccgtaatatattgtgtaattctaataaaattcaaataat |
408 |
Q |
| |
|
||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| |
|
|
| T |
33214503 |
taaacttctttttatgactgagtaatttttttgacttaatcaccaatgagtgattaaaccgtgatatattgtgtaattgtaataaaattcaaataat |
33214407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 605 times since January 2019
Visitors: 3653