View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0558_high_2 (Length: 374)
Name: NF0558_high_2
Description: NF0558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0558_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 9 - 345
Target Start/End: Original strand, 31389467 - 31389804
Alignment:
| Q |
9 |
agcagagaagagaaaggtcgaacagaatgctgaattcaaaaatacttaaaaggattacaagaaggatagcaacttacataaaagagaatttaaaaataca |
108 |
Q |
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| T |
31389467 |
agcagagaagagaaaggtcgaacagaatgctgaattcaaaaatacttaaaaggattacaagaaggatagcaacttacataaaagagaatttaaaaataca |
31389566 |
T |
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| Q |
109 |
atatcaattacaaatatcatacattttttaaggacaagtgt-gtatatttttcagacacaaattagagactcttaacttctaatgactttaccatgtctt |
207 |
Q |
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| T |
31389567 |
atatcaattacaaatatcatacattttttaaggacaagtgttgtatatttttcagacacaaattagagactcttaacttctaatgactttaccatgtctt |
31389666 |
T |
|
| Q |
208 |
caacaattcttgcaattgtccatgactccattattgctcctcgacaaacaactaatcattacaccctatggattaaatgagagttgccaatcttctttga |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |
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| T |
31389667 |
caacaattcttgcaattgtccatgactccattattgctccccgacaaacaactaattattacaccctatggattaaatgagagttgccaatcttctttca |
31389766 |
T |
|
| Q |
308 |
aaactagaaccatttctataaatacttatggtattcta |
345 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
31389767 |
aaactagaaccatttctataaatacttatggtattcta |
31389804 |
T |
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