View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0558_low_6 (Length: 307)
Name: NF0558_low_6
Description: NF0558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0558_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 268; Significance: 1e-149; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 11 - 297
Target Start/End: Complemental strand, 31389500 - 31389216
Alignment:
| Q |
11 |
ttcagcattctgttcgacctttctcttctctgcttttttatctttgcttgtgaaacttttaagccgattgataagtactgtgagaggcaaatgattgatc |
110 |
Q |
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| T |
31389500 |
ttcagcattctgttcgacctttctcttctctgcttttttatctttgcttgtgaaacttttaagccgattgataagtactgtgagaggcaaatgattgatc |
31389401 |
T |
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| Q |
111 |
tggcatgtcatcagggacgtgatctgaaggtaaaagtaaagatactcagataatgaattccttttgaaggctttggcttacaatggttatttgtgtatat |
210 |
Q |
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| T |
31389400 |
tggcatgtcatcagggacgtgatctgaaggtaaaagtaaagatactaagataatgaattccttttgaaggctttggcttacaatggttatttgtgtatat |
31389301 |
T |
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| Q |
211 |
tgtctcaataatttcgccatctattgttctcacaactcttttcttcacaacacaattatgccacatatatttataatagcttctctg |
297 |
Q |
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| T |
31389300 |
tgtctcaataatttcgccatctattgttctcacaactcttttcttcacaacacaattataccac--atatttataatagcttctctg |
31389216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 82 - 297
Target Start/End: Complemental strand, 31462104 - 31461885
Alignment:
| Q |
82 |
taagtactgtgagaggcaaatgattgatctggcatgtcatcagggacgtgatctgaaggtaaaagtaaagatactcagataatgaattcct----tttga |
177 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
31462104 |
taagaactgtgagaggcaaatgattgatctggcatgtcatcagggacgtgatctgaaggtaaaagtaaagatactcagataatgaattccttttctttga |
31462005 |
T |
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| Q |
178 |
aggctttggcttacaatggttatttgtgtatattgtctcaataatttcgccatctattgttctcacaactcttttcttcacaacacaattatgccacata |
277 |
Q |
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| T |
31462004 |
atttttaggcttacaatgattatgtgtgtatattgtcacaataatctcttcatcaattgttctcacaactctttccttcacaacaaaattaggctacata |
31461905 |
T |
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| Q |
278 |
tatttataatagcttctctg |
297 |
Q |
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|||||| |||||||||||| |
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| T |
31461904 |
catttattatagcttctctg |
31461885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 204 - 294
Target Start/End: Complemental strand, 31496588 - 31496498
Alignment:
| Q |
204 |
tgtatattgtctcaataatttcgccatctattgttctcacaactcttttcttcacaacacaattatgccacatatatttataatagcttct |
294 |
Q |
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|||||| ||||||||||| ||| ||||||||||||||| |||| |||||||||||| ||||||| |||| || |||||||||||||||| |
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| T |
31496588 |
tgtatagtgtctcaataacttctccatctattgttctctcaacctttttcttcacaaaacaattaggccatgtacatttataatagcttct |
31496498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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