View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0558_low_8 (Length: 259)
Name: NF0558_low_8
Description: NF0558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0558_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 156; Significance: 6e-83; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 2063825 - 2063599
Alignment:
| Q |
1 |
ttagggtcaaaaacatcaaaacaccatcaatcatggtggtcatcaatcaaatagcaaatagttttgaaatgaaagtagattaattaacaatgctatttct |
100 |
Q |
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||||||| ||||||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
2063825 |
ttagggtaaaaaacatcaaaacaccttaagtcatggtggtcatcaatcaaatagcaaatagttttgaaatgaaagtagattag----caatgctatttct |
2063730 |
T |
|
| Q |
101 |
tgcaactaatgtcatcctgaaaagcttcacgaataaagtttcaacaaaatgaagtagtgtctttcacgaaaaacacagcaagtattgcttgtatgtggtt |
200 |
Q |
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||||||||| ||||| |||| | ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
2063729 |
cgcaactaatatcatctcgaaa-gtttcacgaataaagtttcaacaaa-tgaagtagtgtctttcacgaaaaacatagcaagtattgcttgtatgtggtt |
2063632 |
T |
|
| Q |
201 |
aaacgttttatagcaatcgtgagagtgccgtga |
233 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
2063631 |
aaacgttttatagcaatcgtgagagtgccgtga |
2063599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 2060062 - 2059858
Alignment:
| Q |
1 |
ttagggtcaaaaacatcaaaacaccatcaatcatggtggtcatcaatcaaatagcaaatagttttgaaatgaaagtagattaattaacaatgctatttct |
100 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
2060062 |
ttagggtcaaaaacatcaaaacacc-tcaatcatggtggtcatcaatcaaatagcaaatagttttgaaatgaaagtagattag----caatgctatttct |
2059968 |
T |
|
| Q |
101 |
tgcaactaatgtcatcctgaaaagcttcacgaataaagtttcaacaaaatgaagtagtgtctttcacgaaaaacacagcaagtattgcttgtatgtggtt |
200 |
Q |
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||||||||| ||||| |||| | ||| |||||||||||||||| || | |||| ||| |||||||| |||||| |||||||||||||||||||||||| |
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| T |
2059967 |
cgcaactaatatcatctcgaaa-gtttcgcgaataaagtttcaaccaatt-aagttgtgcctttcacggaaaacaaagcaagtattgcttgtatgtggtt |
2059870 |
T |
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| Q |
201 |
aaacgttttata |
212 |
Q |
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| | |||||||| |
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| T |
2059869 |
acatgttttata |
2059858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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