View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0558_low_9 (Length: 228)
Name: NF0558_low_9
Description: NF0558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0558_low_9 |
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| [»] scaffold0187 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 176; Significance: 6e-95; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 13 - 209
Target Start/End: Complemental strand, 37855831 - 37855633
Alignment:
| Q |
13 |
aatatgttgttggaagcaaaagacattaagagagaataaacatgaaatattattcatattaaacattacttatcatagtttacaaatgataatcaatagt |
112 |
Q |
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| T |
37855831 |
aatatgttgttggaagcaaaagacattaagagagaataaacatgaaatattattcatattaaacattacttatcatagtttacaaatgataatcaatagt |
37855732 |
T |
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| Q |
113 |
gaccatttacaacagagaggtacaaacaaattaaaaatggataaacagaaaagattgttcg--tatcctactgatcaggttgagcttggcaatgaattt |
209 |
Q |
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| T |
37855731 |
gaccatttacaacagagaggcacaaacaaattaaaaatggataaacagaaaataatgttcgtatatcctactgatcaggttgagcttggcaatgaattt |
37855633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 50 - 209
Target Start/End: Complemental strand, 37867982 - 37867821
Alignment:
| Q |
50 |
aaacatgaaatattattcatattaaacattacttatcatagtttacaaatgataatcaatagtgaccatttacaacagagaggtacaaacaaattaaaaa |
149 |
Q |
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| T |
37867982 |
aaacaagaaagattattcatattaaacattatttatcatagtttacaaatgataatcaatagtgaccatttacaacagagaggcacaaacaaattaaaaa |
37867883 |
T |
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| Q |
150 |
tggataaacagaaaagattgttcg--tatcctactgatcaggttgagcttggcaatgaattt |
209 |
Q |
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| T |
37867882 |
tggataaacagaaaataatgttcgtatatcctactgatcaggttgagcttggcaatgaattt |
37867821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 33 - 209
Target Start/End: Complemental strand, 37882033 - 37881861
Alignment:
| Q |
33 |
agacattaagagagaataaacatgaaatattattcatattaaacattacttatcatagtttacaaatgataatcaatagtgaccatttacaacagagagg |
132 |
Q |
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| T |
37882033 |
agacatgaagaaagaataaacttgaaagattattcatattta-cattacttggcatggttcacaaatgataatcaata---actaattacaacagagaag |
37881938 |
T |
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| Q |
133 |
tacaaacaaattaaaaatggataaacagaaaagattgttcgtatcctactgatcaggttgagcttggcaatgaattt |
209 |
Q |
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| T |
37881937 |
tacatacaaattaaaaatggataaacagaaaataatgttcgtatcctactgatcaggttgagcttggcaatgaattt |
37881861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 50 - 209
Target Start/End: Complemental strand, 37911965 - 37911806
Alignment:
| Q |
50 |
aaacatgaaatattattcatattaaacattacttatcatagtttacaaatgataatcaatagtgaccatttacaacagagaggtacaaacaaattaaaa- |
148 |
Q |
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| T |
37911965 |
aaacttgaaagattattcatattta-cattacttggcatggttcacaaatgataatcaata---actaattacaac--agaggtataaacaaattaaaag |
37911872 |
T |
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| Q |
149 |
---atggataaacagaaaagattgttcg--tatcctactgatcaggttgagcttggcaatgaattt |
209 |
Q |
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| T |
37911871 |
tggatggattaacagaaaataatgttcgtatatcctactgatcaggttgagcttggcaatgaattt |
37911806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187 (Bit Score: 160; Significance: 2e-85; HSPs: 3)
Name: scaffold0187
Description:
Target: scaffold0187; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 9 - 209
Target Start/End: Original strand, 16741 - 16943
Alignment:
| Q |
9 |
gaataatatgttgttggaagcaaaagacattaagagagaataaacatgaaatattattcatattaaacattacttatcatagtttacaaatgataatcaa |
108 |
Q |
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||||| |||| |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
16741 |
gaatattatgatgttcgaagtaaaagacattaagagagaataaacatgaaatattattcatattaaacattatttatcatagtttacaaatgataatcaa |
16840 |
T |
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| Q |
109 |
tagtgaccatttacaacagagaggtacaaacaaattaaaaatggataaacagaaaagattgttcg--tatcctactgatcaggttgagcttggcaatgaa |
206 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |||||| ||||||||||||||||||||||||||||||||| |
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| T |
16841 |
tagtgaccatttacaacagagaggcacaaacaaattaaaaatggataaacagaaaataatgttcgtatatcctactgatcaggttgagcttggcaatgaa |
16940 |
T |
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| Q |
207 |
ttt |
209 |
Q |
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||| |
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| T |
16941 |
ttt |
16943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187; HSP #2
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 9 - 209
Target Start/End: Original strand, 27069 - 27271
Alignment:
| Q |
9 |
gaataatatgttgttggaagcaaaagacattaagagagaataaacatgaaatattattcatattaaacattacttatcatagtttacaaatgataatcaa |
108 |
Q |
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||||| |||| |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
27069 |
gaatattatgatgttcgaagtaaaagacattaagagagaataaacatgaaatattattcatattaaacattaattatcatagtttacaaatgataatcaa |
27168 |
T |
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| Q |
109 |
tagtgaccatttacaacagagaggtacaaacaaattaaaaatggataaacagaaaagattgttcg--tatcctactgatcaggttgagcttggcaatgaa |
206 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |||||| |||||||||||||||||||| |||||||||||| |
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| T |
27169 |
tagtgaccatttacaacagagaggcacaaacaaattaaaaatggataaacagaaaataatgttcgtatatcctactgatcaggttgaccttggcaatgaa |
27268 |
T |
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| Q |
207 |
ttt |
209 |
Q |
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||| |
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| T |
27269 |
ttt |
27271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 23 - 209
Target Start/End: Original strand, 6431 - 6615
Alignment:
| Q |
23 |
tggaagcaaaagacattaagagagaataaacatgaaatattattcatattaaacattacttatcatagtttacaaatgataatcaatagtgaccatttac |
122 |
Q |
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|||||||||||||| | |||||||||||||| ||||| ||||||||||| ||||||||| ||| ||| ||||||||||||||||| || | |||| |
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| T |
6431 |
tggaagcaaaagacgtgaagagagaataaacttgaaaggttattcatatt-tacattacttggcatggttcacaaatgataatcaata---actaattac |
6526 |
T |
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| Q |
123 |
aacagagaggtacaaacaaattaaaa----atggataaacagaaaagattgttcgtatcctactgatcaggttgagcttggcaatgaattt |
209 |
Q |
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||| ||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6527 |
aac--agaggtataaacaaattaaaagtggatggattaacagaaaagattgttcgtatcctactgatcaggttgagcttggcaatgaattt |
6615 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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