View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0559_high_11 (Length: 324)
Name: NF0559_high_11
Description: NF0559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0559_high_11 |
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Alignment Details
Target: chr2 (Bit Score: 201; Significance: 1e-109; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 22 - 226
Target Start/End: Original strand, 41819501 - 41819705
Alignment:
| Q |
22 |
accatgtgtcggtgttgaacacggagacatgtcagaccatgtgtcggtgttgaacacggagacatgtcagacaccaaacatgtttttgatgtgaagtatc |
121 |
Q |
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| T |
41819501 |
accatgtgtcagtgttgaacacggagacatgtcagaccatgtgtcggtgttgaacacggagacatgtcagacaccaaacatgtttttgatgtgaagtatc |
41819600 |
T |
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| Q |
122 |
ggtgctgcgtatattgaaactgcatcattttcaatgattctttaagattgatgtagattaaaatatagcagattaaacacatggatgaatttacatacca |
221 |
Q |
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| T |
41819601 |
ggtgctgcgtatattgaaactgcatcattttcaatgattctttaagattgatgtagattaaaatatagcagattaaacacatggatgaatttacatacca |
41819700 |
T |
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| Q |
222 |
tggag |
226 |
Q |
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||||| |
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| T |
41819701 |
tggag |
41819705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 41819515 - 41819572
Alignment:
| Q |
1 |
ttgaacacggagacatgtcagaccatgtgtcggtgttgaacacggagacatgtcagac |
58 |
Q |
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| T |
41819515 |
ttgaacacggagacatgtcagaccatgtgtcggtgttgaacacggagacatgtcagac |
41819572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 227 - 318
Target Start/End: Complemental strand, 43498395 - 43498304
Alignment:
| Q |
227 |
cagagatacaaaagaacagtataatggtgctgccccaattttacaccttgggaaattgctgaatcaaataaggataaagctccctttaaatc |
318 |
Q |
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| T |
43498395 |
cagagatacaaaagaacagtataatggtgctgccccaattttacaccttgggaaattgctgaatcaaataaggatcaagctccctttaaatc |
43498304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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