View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0559_high_2 (Length: 497)
Name: NF0559_high_2
Description: NF0559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0559_high_2 |
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| [»] scaffold0391 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 387; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 11 - 417
Target Start/End: Original strand, 33950530 - 33950936
Alignment:
| Q |
11 |
cacagacaggcaaaaacagaagaaggaatctcaaattcatgagtagcgctacacacattattacccttacaacaagatttcaatttcatgatgtcttgaa |
110 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
33950530 |
cacagacaggcaaaaacagaagaaggaatctcaaattcatgagtagcgctacacacattattacccttacaacaagatttcaatttaatgatgtcttgaa |
33950629 |
T |
|
| Q |
111 |
caaaatatctcaaattcttcaaaaagcacaaaagaaccaaagttcaaggcgatcattgaggttaatcttaaaggatttatctcccgttgtacaagatata |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33950630 |
caaaatatctcaaattcttcaaaaagcacaaaagaaccaaagttcaaggcgatcattgaggttaatcttaaaggatttatctcccgttgtacaagatata |
33950729 |
T |
|
| Q |
211 |
aagcaatacaatgatcatttggatcaccccagagaagaaataaatagtctgatagaagaaaatgatgcaggagaaagtgcatgcaaatgttcttctgaga |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |
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| T |
33950730 |
aagcaatacaatgatcatttggatcaccccagagaagaaataaatagtctgatagaagaaaatgatgcaggagaaagtgcatgtacatgttcttctgaga |
33950829 |
T |
|
| Q |
311 |
atgattcctatggctatgttgttgaggagaaccaatctcttactgtaaatgatgttgaagagacgctttataaggccagagaaattcttgagcttctcat |
410 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
33950830 |
atgattcctatggctatgttgttgaggagaaccaatctcttactgtaaatgatgttgaagagacgctttataagaccagagaaattcttgagcttctcaa |
33950929 |
T |
|
| Q |
411 |
ccatgaa |
417 |
Q |
| |
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||||||| |
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| T |
33950930 |
ccatgaa |
33950936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 15 - 468
Target Start/End: Original strand, 33990013 - 33990457
Alignment:
| Q |
15 |
gacaggcaaaaacagaagaaggaatctcaaattcatgagtagcgc---tacacacattattacccttacaacaagatttcaatttcatgatgtcttgaac |
111 |
Q |
| |
|
||||||||||| |||| |||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| ||||||||||||||| |
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| T |
33990013 |
gacaggcaaaagcagaggaaggaatctcaaattcatgagtagcgccactacacatattattacccttacaacaagattt------catgatgtcttgaac |
33990106 |
T |
|
| Q |
112 |
aaaatatctcaaattcttcaaaaagcacaaaagaaccaaagttcaaggcgatcattgaggttaatcttaaaggatttatctcccgttgtacaagatataa |
211 |
Q |
| |
|
|||||||||||||| || ||| ||||| |||| |||||||| |||||| || ||||||| |||||| ||||||||| ||| || || ||||| |||| |
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| T |
33990107 |
aaaatatctcaaatagttgaaacagcacgaaagcaccaaagtgcaaggcaattgttgaggtcaatcttgaaggatttaactcttgtggttcaagacataa |
33990206 |
T |
|
| Q |
212 |
agcaatacaatgatcatttggatcaccccagagaagaaataaatagtctgatagaagaaaatgatgcaggagaaagtgcatgcaaatgttcttctgagaa |
311 |
Q |
| |
|
||||||||||||| ||||||||||| |||||||||||||| || | ||| |||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
33990207 |
agcaatacaatgaacatttggatcatcccagagaagaaatcaagactctattagaagaaaatgatgcagaagaaagtgcatgcaaatgttcttctgagaa |
33990306 |
T |
|
| Q |
312 |
tgattcctatggctatgttgttgaggagaaccaatctcttactgtaaatgatgttgaagagacgctttataaggccagagaaattcttgagcttctcatc |
411 |
Q |
| |
|
|||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | |
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| T |
33990307 |
tgattc------ctatgttgttgatgagaaccaatctcttattgtaaatgatgttgaagagacactttataaggccagagaaattcttgagcttctcaac |
33990400 |
T |
|
| Q |
412 |
catgaaaattttgtacacaaattcaatgaagatggacaactttttaagcgtcctttc |
468 |
Q |
| |
|
|||||| ||||| ||||||||||||||||| | || || ||| |||||||||||| |
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|
| T |
33990401 |
tatgaaacttttgaacacaaattcaatgaagctaaaccacctttcaagcgtcctttc |
33990457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 180 - 420
Target Start/End: Original strand, 33959346 - 33959580
Alignment:
| Q |
180 |
aaaggatttatctcccgttgtacaagatataaagcaatacaatgatcatttggatcaccccagagaagaaataaatagtctgatagaagaaaatgatgca |
279 |
Q |
| |
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||||||||||||||| || || ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |
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| T |
33959346 |
aaaggatttatctcctgtggttcaagacataaagcaatacaatgatcatttggatcaccccagagaggaaataaatagtctaatagaagaaaatgatgca |
33959445 |
T |
|
| Q |
280 |
ggagaaagtgcatgcaaatgttcttctgagaatgattcctatggctatgttgttgaggagaaccaatctcttactgtaaatgatgttgaagagacgcttt |
379 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |||||||||||||||||| || |||| |
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| T |
33959446 |
ggagaaagtgcatgcaaatgttcttctgagaatgattc------ctatgttgttgatgagaaccaatctcttattgtaaatgatgttgaagaaacacttt |
33959539 |
T |
|
| Q |
380 |
ataaggccagagaaattcttgagcttctcatccatgaaaat |
420 |
Q |
| |
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||||| | |||||||||||||||||||||| ||| |||||| |
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| T |
33959540 |
ataagccaagagaaattcttgagcttctcaaccacgaaaat |
33959580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 41 - 420
Target Start/End: Original strand, 33973227 - 33973582
Alignment:
| Q |
41 |
tcaaattcatgagtagcgctac---acacattattacccttacaacaagatttcaatttcatgatgtcttgaacaaaatatctcaaattcttcaaaaagc |
137 |
Q |
| |
|
||||||||||||||||||| || ||| |||||||||||||||||||||||| | |||||||||||||||||||||| |||| || ||| ||| |
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|
| T |
33973227 |
tcaaattcatgagtagcgccacgacacatattattacccttacaacaagatttaa------tgatgtcttgaacaaaatatctgaaatagttgaaacagc |
33973320 |
T |
|
| Q |
138 |
acaaaagaaccaaagttcaaggcgatcattgaggttaatcttaaaggatttatctcccgttgtacaagatataaagcaatacaatgatcatttggatcac |
237 |
Q |
| |
|
|| |||||||||||||||||||| || || ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||||||| |
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|
| T |
33973321 |
acgaaagaaccaaagttcaaggctattgtttaggttaatcttaaaggatttatctcccgttgtacaagatataaagcattacaatgaacacttggatcaa |
33973420 |
T |
|
| Q |
238 |
cccagagaagaaataaatagtctgatagaagaaaatgatgcaggagaaagtgcatgcaaatgttcttctgagaatgattcctatggctatgttgttgagg |
337 |
Q |
| |
|
||||||||||||||||||||| ||||||| ||||||||||||||||| ||||| |||||||||||| ||| |||||||| | |
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|
| T |
33973421 |
cccagagaagaaataaatagtttgataga---------------agaaagtgcatgcaaatcttcttttgagaatgattc------ctacgttgttgatg |
33973499 |
T |
|
| Q |
338 |
agaaccaatctcttactgtaaatgatgttgaagagacgctttataaggccagagaaattcttgagcttctcatccatgaaaat |
420 |
Q |
| |
|
||||||||||||||| |||||||||||| |||||||| ||||| |||||||||||||||||||||||||||| ||| |||||| |
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|
| T |
33973500 |
agaaccaatctcttattgtaaatgatgtcgaagagacactttacaaggccagagaaattcttgagcttctcaaccacgaaaat |
33973582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 42 - 144
Target Start/End: Original strand, 33959247 - 33959349
Alignment:
| Q |
42 |
caaattcatgagtagcgctacacacattattacccttacaacaagatttcaatttcatgatgtcttgaacaaaatatctcaaattcttcaaaaagcacaa |
141 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |
|
|
| T |
33959247 |
caaattcatgagtagcgctacacacattattacccttacaacaagatttcaatttcatgatgtcttgaacaaaatatctcaaatacttcaaaaagcacga |
33959346 |
T |
|
| Q |
142 |
aag |
144 |
Q |
| |
|
||| |
|
|
| T |
33959347 |
aag |
33959349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 431 - 468
Target Start/End: Original strand, 33950935 - 33950972
Alignment:
| Q |
431 |
aattcaatgaagatggacaactttttaagcgtcctttc |
468 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
33950935 |
aattcaatgaagatggacaacttttcaagcgtcctttc |
33950972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0391 (Bit Score: 61; Significance: 6e-26; HSPs: 1)
Name: scaffold0391
Description:
Target: scaffold0391; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 324 - 448
Target Start/End: Original strand, 10341 - 10465
Alignment:
| Q |
324 |
ctatgttgttgaggagaaccaatctcttactgtaaatgatgttgaagagacgctttataaggccagagaaattcttgagcttctcatccatgaaaatttt |
423 |
Q |
| |
|
|||||| ||||| || |||||||||||||| |||||||||||| ||||||| ||||| |||||||||||||||||||| ||||| | | | ||||||||| |
|
|
| T |
10341 |
ctatgtcgttgatgataaccaatctcttacggtaaatgatgttaaagagacactttacaaggccagagaaattcttgaacttcttaacaaggaaaatttt |
10440 |
T |
|
| Q |
424 |
gtacacaaattcaatgaagatggac |
448 |
Q |
| |
|
| ||| ||||| |||||| |||||| |
|
|
| T |
10441 |
gaacagaaatttaatgaaaatggac |
10465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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