View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0559_high_4 (Length: 435)
Name: NF0559_high_4
Description: NF0559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0559_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 142; Significance: 2e-74; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 155 - 308
Target Start/End: Original strand, 43319185 - 43319338
Alignment:
| Q |
155 |
atatgcaaggtggttgcagttggagagtgtgggttagactatgaccggcttcatttttgccccaccgagattcaaaagaggtacgtactgtttacctgtt |
254 |
Q |
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| T |
43319185 |
atatgcaaggtggttgcagttggagagtgtggattagactatgaccggcttcatttttgccccgccgagattcaaaagaggtacgtactgtttacctgtt |
43319284 |
T |
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| Q |
255 |
gctacgcatgttgcttttgtaatcccccatttaaaaaatattaaactattagaa |
308 |
Q |
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| T |
43319285 |
gctacgcatgttacttttgtaatcccccatttaaaaaatattaaactattagaa |
43319338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 325 - 425
Target Start/End: Original strand, 43319324 - 43319424
Alignment:
| Q |
325 |
attaaactattagaattattaatgaaattttgttgttgtttgtgaatgctaggtatttcgagaagcaatttgaattggcatacatcacaaaattgcctat |
424 |
Q |
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| T |
43319324 |
attaaactattagaattattaatgaaattttgttgttgtttgtgaatgctaggtatttcgagaagcaatttgaattggcatacatcacaaaattgcctat |
43319423 |
T |
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| Q |
425 |
g |
425 |
Q |
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| T |
43319424 |
g |
43319424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 30 - 104
Target Start/End: Original strand, 43319083 - 43319157
Alignment:
| Q |
30 |
ctatacatgtcacaatgtatgttgatattcatgtagttgcagaacttgtgctctagttctaagactactgtccaa |
104 |
Q |
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| T |
43319083 |
ctatacatgtcacaatgtatgttgttattcatgtagttgctgaacttttgctctagttctaaaactactgtccaa |
43319157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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