View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0559_low_1 (Length: 956)
Name: NF0559_low_1
Description: NF0559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0559_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 677; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 677; E-Value: 0
Query Start/End: Original strand, 1 - 862
Target Start/End: Complemental strand, 55696838 - 55695975
Alignment:
| Q |
1 |
agttgaaggctttcgtggtttgggttcccgtctccacatttacaagtcccatgaatctggggatcgttttccttcatctcatacatgcttttgtcggctg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |||||||||||||||||||||||| ||||||| |
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| T |
55696838 |
agttgaaggctttcgtggtttgggttcccgtctccacatttacaagtcccatgaatccggtgatcgtcttccttcatctcatacatgcttttatcggctg |
55696739 |
T |
|
| Q |
101 |
tgtttcccagcttattcatctatgcctgtcatgcaagctcgacttaaagtcattacccaagaacatattggctctagttttggtacttggtgaacatacc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55696738 |
tgtttcccagcttattcatctatgcctgtcatgcaagctcgtcttaaagtcattacccaagaacatattggctctagttttggtacttggtgaacatacc |
55696639 |
T |
|
| Q |
201 |
tgcaatctggaaagaaactggttttgatttgactgcacatagaattattgttctgcagctttgtacagactataggagcatcccatctgttgtcctctag |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55696638 |
tgcaatctggaaagaaactggttttgatttgactgcacatagaattatcgttctgcagctttgtacagactataggagcatcccatctgttgtcctctag |
55696539 |
T |
|
| Q |
301 |
ttggatactttgagaaagttgtcaaagttctgttttggaaagtagtcaagggatgtaattttattgatcttggtcaaatgtttatatggataaaatatta |
400 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55696538 |
ttggatactttgagaaagttatcaaagttctgttttggaaagtagtcaagggatgtaattttattgatcttggtcaaatgtttatatggataaaatatta |
55696439 |
T |
|
| Q |
401 |
ataatacatgatttgaaggannnnnnnnnnatatctacattctagttaatagctgctggttcgtcatcgggagtgtggcacaacaattaagtttgtgaag |
500 |
Q |
| |
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| T |
55696438 |
ataatacaggatttgaagga-tttttttttatatctacattcaagttaatagctgctggttcgtcatcgggagtgtggcacaaccattaagtttgtgaag |
55696340 |
T |
|
| Q |
501 |
tgctagcagcgcattctcgaacactttctgaaatgtgttatgtatacgtttggtttggcgatagcatcggttttcttgcgttccaaggtaaatgcattgt |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| |
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|
| T |
55696339 |
tgctagcagcgcattctcgaacactttctgaaatgtgttatgtatacgtttggtttggcgatagcatcagttttcttgcattccaaggtaaatgcattgt |
55696240 |
T |
|
| Q |
601 |
gcaaattgggaaactacgtggtgtagcagcaaccaaacattggatcaagattctctctattg--nnnnnnnntttgaggcaataatgtagagatcttaat |
698 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |||||||||||||||||||| |
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| T |
55696239 |
tcaaattgggaaactacgtggtgtagcagcaaccaaacacgggatcaagattctctctattgaaaaaaaaaacttgaggaaataatgtagagatcttaat |
55696140 |
T |
|
| Q |
699 |
cagtgatcttgaccattgataatatggagatcaatggttaagatcacctcattatttcctcaagnnnnnnnnncccaattgagagaatccatttccctag |
798 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
55696139 |
cactgatcttgaccattgataatatggagatcaatggttaagatctcctcattatttcctcaag-ttttttttcccaattgagagaatccatttccctag |
55696041 |
T |
|
| Q |
799 |
tttctatggg--atccctatgaatttcaaatttcagtcagtaaatagtgttttagagattgtgatg |
862 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
55696040 |
tttctatgggatatccctatgaatttcaaatttcagtcagtaaatagtgttttagagattgtgatg |
55695975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 703 - 744
Target Start/End: Original strand, 7898163 - 7898204
Alignment:
| Q |
703 |
gatcttgaccattgataatatggagatcaatggttaagatca |
744 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| ||||||| |
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|
| T |
7898163 |
gatcttgaccattgataatgtggagatcaatggtcaagatca |
7898204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 711 - 743
Target Start/End: Original strand, 26919500 - 26919532
Alignment:
| Q |
711 |
ccattgataatatggagatcaatggttaagatc |
743 |
Q |
| |
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||||||||||||||||||||||||||||||||| |
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|
| T |
26919500 |
ccattgataatatggagatcaatggttaagatc |
26919532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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