View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0559_low_12 (Length: 430)
Name: NF0559_low_12
Description: NF0559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0559_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 375; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 29 - 423
Target Start/End: Original strand, 6313733 - 6314127
Alignment:
| Q |
29 |
agtagctatttcgcatcaataacatatctaattgatatcgaaaactacgaacctgaagagtatcaccaacattgatgaaaaaagaagtgtgatcaggtgg |
128 |
Q |
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| T |
6313733 |
agtagctattttgcatcaacaacatatctaatcgatatcgaaaactacgaacctgaagagtatcaccaacattgatgaaaaaagaagtgtgatcaggtgg |
6313832 |
T |
|
| Q |
129 |
aactgaaacccaagttccatcagtgagacagatttgcagtcctgatgtgctattagatctcaagacagaaatgacttgtgggtctgtatgctccccaaac |
228 |
Q |
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| T |
6313833 |
aactgaaacccaagttccatcagtgagacagatttgcagtcctgatgtgctattagatctcaagacagaaatgacttgtgggtctgtatgctccccaaac |
6313932 |
T |
|
| Q |
229 |
ccaagcaaattccttccatttaatgctgcttgttgcacctcagggcacggtgggtaatggttaattctgaaacaagaatcacttttctcatctttcaata |
328 |
Q |
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| T |
6313933 |
ccaagcaaattccttccattcaatgctgcttgttgcacctcagggcacggtgggtaatggttaattctgaaacaagaatcacttttctcatctttcaata |
6314032 |
T |
|
| Q |
329 |
acctgcttaacacattctttggctcaatccccaacccatcagccattaattccaacactagacagcacattttcttcattgcagcagtataatct |
423 |
Q |
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| T |
6314033 |
acctgcttaacacattctttggctcaatccccaacccatcagccattaattccaacactagacagcacattttcttcattgcagcaatataatct |
6314127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 79 - 149
Target Start/End: Original strand, 29877254 - 29877324
Alignment:
| Q |
79 |
acctgaagagtatcaccaacattgatgaaaaaagaagtgtgatcaggtggaactgaaacccaagttccatc |
149 |
Q |
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| T |
29877254 |
acctgaagagaatcaccaacattgatgaagaaggatctatgatcaggtgggactgaaatccaacttccatc |
29877324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 5e-26; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 91 - 239
Target Start/End: Complemental strand, 38545503 - 38545355
Alignment:
| Q |
91 |
tcaccaacattgatgaaaaaagaagtgtgatcaggtggaactgaaacccaagttccatcagtgagacagatttgcagtcctgatgtgctattagatctca |
190 |
Q |
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||||||||| | ||||| |||||||||||||||||||| | |||||||||||| ||||| ||||||| |||||||||||||||| ||||||| || | |
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| T |
38545503 |
tcaccaacacttatgaagaaagaagtgtgatcaggtgggattgaaacccaagtcccatctctgagacaaatttgcagtcctgatgcattattagacctta |
38545404 |
T |
|
| Q |
191 |
agacagaaatgacttgtgggtctgtatgctccccaaacccaagcaaatt |
239 |
Q |
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| T |
38545403 |
ggacagatattatctgtgggtcagtatgctccccaaatccaatcaaatt |
38545355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 298 - 383
Target Start/End: Complemental strand, 38545302 - 38545217
Alignment:
| Q |
298 |
aaacaagaatcacttttctcatctttcaataacctgcttaacacattctttggctcaatccccaacccatcagccattaattccaa |
383 |
Q |
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||||||||||||||| |||||||| ||| || ||||| ||||||||| |||| ||||||| ||| ||||| |||||||||||||| |
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| T |
38545302 |
aaacaagaatcacttctctcatctctcaccaatctgctaaacacattccttggttcaatcctcaatccatctgccattaattccaa |
38545217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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