View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0559_low_13 (Length: 407)
Name: NF0559_low_13
Description: NF0559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0559_low_13 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 264; Significance: 1e-147; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 72 - 407
Target Start/End: Original strand, 25217926 - 25218262
Alignment:
| Q |
72 |
tttttgtactgtctaacttacatccaaaaataagtagattatcaacactggaaaaatgttttaataggcaatgaaattcctttataactttcacaagctt |
171 |
Q |
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| T |
25217926 |
tttttgtactgtctaacttacatccaaaaataagtagattattaacattgtaaaaatgttttaataggcaatgaaattcctttataactttcacaagctt |
25218025 |
T |
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| Q |
172 |
aattagacaactgatgataatatgtgtattctcaataactcctcacaattctttcttctttccaaaacttacatgtttgtcatcatcttcatc-ccnnnn |
270 |
Q |
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| T |
25218026 |
aattagacaactgatgataatatgtgcattctcaataactcctcacaattctttcttctttccaaaacttacatgtttgtcatcatcttcgtcacaaaaa |
25218125 |
T |
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| Q |
271 |
nnnctatgaatagattggtaatacattgtgaataacaaaaagattgcaccataaaaagattgcttggactagttggaagagtgtgtgcagactaagcata |
370 |
Q |
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| T |
25218126 |
aaactatgaatagattggtaatacattgtgaataacaaaaagattgcaccataaaaagattgcttggactagctggaagaatttgtgcagactaagcata |
25218225 |
T |
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| Q |
371 |
tgggtggacttggagtacaaaatttggtgttattcaa |
407 |
Q |
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| T |
25218226 |
tgggtggacttggagtacaaaattaggagttattcaa |
25218262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 72 - 407
Target Start/End: Original strand, 25282081 - 25282417
Alignment:
| Q |
72 |
tttttgtactgtctaacttacatccaaaaataagtagattatcaacactggaaaaatgttttaataggcaatgaaattcctttataactttcacaagctt |
171 |
Q |
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| T |
25282081 |
tttttgtactgtctaacttacatccaaaaataagtagattattaacattgtaaaaatgttttaataggcaatgaaattcctttataactttcacaagctt |
25282180 |
T |
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| Q |
172 |
aattagacaactgatgataatatgtgtattctcaataactcctcacaattctttcttctttccaaaacttacatgtttgtcatcatcttcatc-ccnnnn |
270 |
Q |
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| T |
25282181 |
aattagacaactgatgataatatgtgcattctcaataactcctcacaattctttcttctttccaaaacttacatgtttgtcatcatcttcgtcacaaaaa |
25282280 |
T |
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| Q |
271 |
nnnctatgaatagattggtaatacattgtgaataacaaaaagattgcaccataaaaagattgcttggactagttggaagagtgtgtgcagactaagcata |
370 |
Q |
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| T |
25282281 |
aaactatgaatagattggtaatacattgtgaataacaaaaagattgcaccataaaaagattgcttggactagctggaagaatttgtgcagactaagcata |
25282380 |
T |
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| Q |
371 |
tgggtggacttggagtacaaaatttggtgttattcaa |
407 |
Q |
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| T |
25282381 |
tgggtggacttggagtacaaaattaggagttattcaa |
25282417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 219 - 266
Target Start/End: Complemental strand, 37158858 - 37158811
Alignment:
| Q |
219 |
attctttcttctttccaaaacttacatgtttgtcatcatcttcatccc |
266 |
Q |
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| T |
37158858 |
attctttcttcttgccgaaaattacatgattgtcatcatcttcatccc |
37158811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 164 - 204
Target Start/End: Complemental strand, 43392189 - 43392149
Alignment:
| Q |
164 |
acaagcttaattagacaactgatgataatatgtgtattctc |
204 |
Q |
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| T |
43392189 |
acaagcttaattagaccattgatgataatatgtgcattctc |
43392149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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