View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0559_low_14 (Length: 394)

Name: NF0559_low_14
Description: NF0559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0559_low_14
NF0559_low_14
[»] chr6 (7 HSPs)
chr6 (35-387)||(9127860-9128212)
chr6 (35-188)||(9193231-9193386)
chr6 (36-100)||(9164425-9164489)
chr6 (54-98)||(9127070-9127114)
chr6 (322-382)||(33415856-33415916)
chr6 (230-267)||(30031498-30031535)
chr6 (229-269)||(24698858-24698898)
[»] chr1 (6 HSPs)
chr1 (231-268)||(45168483-45168520)
chr1 (230-269)||(25715327-25715366)
chr1 (230-269)||(44751726-44751765)
chr1 (230-259)||(27847811-27847840)
chr1 (230-271)||(52561588-52561629)
chr1 (239-271)||(52292290-52292322)
[»] chr8 (3 HSPs)
chr8 (230-269)||(10668498-10668537)
chr8 (230-266)||(26055663-26055699)
chr8 (231-267)||(43903921-43903957)
[»] chr7 (1 HSPs)
chr7 (230-269)||(12966258-12966297)
[»] chr4 (6 HSPs)
chr4 (230-269)||(6957840-6957879)
chr4 (230-269)||(26024851-26024890)
chr4 (230-269)||(31961267-31961306)
chr4 (228-269)||(8327141-8327182)
chr4 (239-267)||(31339775-31339803)
chr4 (229-269)||(49416948-49416988)
[»] chr2 (3 HSPs)
chr2 (234-269)||(10516750-10516785)
chr2 (230-267)||(43970022-43970059)
chr2 (237-269)||(12882046-12882078)


Alignment Details
Target: chr6 (Bit Score: 313; Significance: 1e-176; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 35 - 387
Target Start/End: Complemental strand, 9128212 - 9127860
Alignment:
Q  35 gatccaaaactctcacatgataaagtttgtgtgaaattttgacttgagaaaatatattgtaatccagggagtaatgtaccttgagaagtgtctgactgaa 134  Q
    ||||||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |||||||||||||||    
T  9128212 gatccaaaactctcacatgatcaagtttgtgtgaaattttgactagagaatatatattgtaatccagggagtaatgtaccttgaaaagtgtctgactgaa 9128113  T
Q  135 aaattgtgttgtcaaatggagacgctatgcacaacggaattttaacaaaatgatgttgtactattttgtaaacgggcgatgacacactcaaagtaagccg 234  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  9128112 atattgtgttgtcaaatggagacgctatgcacaacggaattttaacaaaatgatgttgtactattttgtaaacgggcgatgacgcactcaaagtaagccg 9128013  T
Q  235 atctcacttagtgggataaggcttgcttgttgttggttgtaaaaacaataggaaaatgtgaaatgcaaccttgatcaacctatcgtgtacttgagggcat 334  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9128012 atctcacttagtgggataaggcttgcttgctgttggttgtaaaaacaataggaaaatgtgaaatgcaaccttgatcaacctatcgtgtacttgagggcat 9127913  T
Q  335 tcagccacttgcatggctatatcatcaacaagctcttcaaaaatttcatctca 387  Q
    ||||||||||||||||||||||||||||||||||||| ||||| |||| ||||    
T  9127912 tcagccacttgcatggctatatcatcaacaagctctttaaaaacttcacctca 9127860  T

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Target: chr6; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 35 - 188
Target Start/End: Complemental strand, 9193386 - 9193231
Alignment:
Q  35 gatccaaaactctcacatgataaagtttgtgtgaaattttgacttgagaaaatata---ttgtaatccagggagtaatgtaccttgagaagtgtctgact 131  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||||| | ||||   ||||||||||||||||  |||||||| | ||||| | |||     
T  9193386 gatccaaaaccctcacatgacaaagtttgtgtgaaattttgacttgagatattatattcttgtaatccagggagttttgtacctt-aaaagtgaccgacc 9193288  T
Q  132 gaaaaattgtgttgtcaaatggagacgctatgcacaacggaattttaacaaaatgat 188  Q
    |||  ||||||||||| ||| | | ||||||||||| ||||||||||||||| ||||    
T  9193287 gaagtattgtgttgtcgaatagcggcgctatgcacagcggaattttaacaaactgat 9193231  T

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Target: chr6; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 36 - 100
Target Start/End: Original strand, 9164425 - 9164489
Alignment:
Q  36 atccaaaactctcacatgataaagtttgtgtgaaattttgacttgagaaaatatattgtaatcca 100  Q
    ||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  9164425 atccaaaactctcgcatgataaattttgtgtgaaattttgacttgagaaaatatattgtaatcca 9164489  T

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Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 54 - 98
Target Start/End: Complemental strand, 9127114 - 9127070
Alignment:
Q  54 ataaagtttgtgtgaaattttgacttgagaaaatatattgtaatc 98  Q
    ||||| ||||| |||||||||||||||||||||||||||||||||    
T  9127114 ataaaatttgtttgaaattttgacttgagaaaatatattgtaatc 9127070  T

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Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 322 - 382
Target Start/End: Original strand, 33415856 - 33415916
Alignment:
Q  322 tacttgagggcattcagccacttgcatggctatatcatcaacaagctcttcaaaaatttca 382  Q
    |||||| |||||  ||||||||||||||||||||||||| ||||||||||  |||||||||    
T  33415856 tacttgggggcacgcagccacttgcatggctatatcatcgacaagctctttgaaaatttca 33415916  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 267
Target Start/End: Original strand, 30031498 - 30031535
Alignment:
Q  230 agccgatctcacttagtgggataaggcttgcttgttgt 267  Q
    |||||| ||||||||||||||||||||||| |||||||    
T  30031498 agccgacctcacttagtgggataaggcttggttgttgt 30031535  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 229 - 269
Target Start/End: Complemental strand, 24698898 - 24698858
Alignment:
Q  229 aagccgatctcacttagtgggataaggcttgcttgttgttg 269  Q
    ||||||||| || |||||||||||||||||| |||||||||    
T  24698898 aagccgatcccatttagtgggataaggcttggttgttgttg 24698858  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 231 - 268
Target Start/End: Complemental strand, 45168520 - 45168483
Alignment:
Q  231 gccgatctcacttagtgggataaggcttgcttgttgtt 268  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  45168520 gccgatctcacttagtgggataaggcttgtttgttgtt 45168483  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 230 - 269
Target Start/End: Complemental strand, 25715366 - 25715327
Alignment:
Q  230 agccgatctcacttagtgggataaggcttgcttgttgttg 269  Q
    |||||| ||||||||||||||||||||||| |||||||||    
T  25715366 agccgacctcacttagtgggataaggcttggttgttgttg 25715327  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 230 - 269
Target Start/End: Original strand, 44751726 - 44751765
Alignment:
Q  230 agccgatctcacttagtgggataaggcttgcttgttgttg 269  Q
    |||||| ||||||||||||||||||||||| |||||||||    
T  44751726 agccgacctcacttagtgggataaggcttggttgttgttg 44751765  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 259
Target Start/End: Complemental strand, 27847840 - 27847811
Alignment:
Q  230 agccgatctcacttagtgggataaggcttg 259  Q
    ||||||||||||||||||||||||||||||    
T  27847840 agccgatctcacttagtgggataaggcttg 27847811  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 271
Target Start/End: Complemental strand, 52561629 - 52561588
Alignment:
Q  230 agccgatctcacttagtgggataaggcttgcttgttgttggt 271  Q
    |||||| | ||||||||||||||||||||| |||||||||||    
T  52561629 agccgaccccacttagtgggataaggcttggttgttgttggt 52561588  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 239 - 271
Target Start/End: Original strand, 52292290 - 52292322
Alignment:
Q  239 cacttagtgggataaggcttgcttgttgttggt 271  Q
    ||||||||||||||||||||| |||||||||||    
T  52292290 cacttagtgggataaggcttggttgttgttggt 52292322  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 230 - 269
Target Start/End: Complemental strand, 10668537 - 10668498
Alignment:
Q  230 agccgatctcacttagtgggataaggcttgcttgttgttg 269  Q
    |||||| ||||||||||||||||||||||| |||||||||    
T  10668537 agccgacctcacttagtgggataaggcttggttgttgttg 10668498  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 266
Target Start/End: Original strand, 26055663 - 26055699
Alignment:
Q  230 agccgatctcacttagtgggataaggcttgcttgttg 266  Q
    |||||||| ||||||||||||||||||||| ||||||    
T  26055663 agccgatcccacttagtgggataaggcttggttgttg 26055699  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 231 - 267
Target Start/End: Complemental strand, 43903957 - 43903921
Alignment:
Q  231 gccgatctcacttagtgggataaggcttgcttgttgt 267  Q
    ||||| ||||||||||||||||||||||| |||||||    
T  43903957 gccgacctcacttagtgggataaggcttggttgttgt 43903921  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 230 - 269
Target Start/End: Original strand, 12966258 - 12966297
Alignment:
Q  230 agccgatctcacttagtgggataaggcttgcttgttgttg 269  Q
    |||||||| ||||||||||||||||||||| |||||||||    
T  12966258 agccgatcccacttagtgggataaggcttggttgttgttg 12966297  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 230 - 269
Target Start/End: Original strand, 6957840 - 6957879
Alignment:
Q  230 agccgatctcacttagtgggataaggcttgcttgttgttg 269  Q
    |||||||| ||||||||||||||||||||| |||||||||    
T  6957840 agccgatcccacttagtgggataaggcttggttgttgttg 6957879  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 230 - 269
Target Start/End: Complemental strand, 26024890 - 26024851
Alignment:
Q  230 agccgatctcacttagtgggataaggcttgcttgttgttg 269  Q
    |||||| ||||||||||||||||||||||| |||||||||    
T  26024890 agccgacctcacttagtgggataaggcttggttgttgttg 26024851  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 230 - 269
Target Start/End: Complemental strand, 31961306 - 31961267
Alignment:
Q  230 agccgatctcacttagtgggataaggcttgcttgttgttg 269  Q
    |||||| ||||||||||||||||||||||| |||||||||    
T  31961306 agccgacctcacttagtgggataaggcttggttgttgttg 31961267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 269
Target Start/End: Original strand, 8327141 - 8327182
Alignment:
Q  228 taagccgatctcacttagtgggataaggcttgcttgttgttg 269  Q
    |||||||| | ||||||||||||||||||||| |||||||||    
T  8327141 taagccgaccccacttagtgggataaggcttggttgttgttg 8327182  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 239 - 267
Target Start/End: Original strand, 31339775 - 31339803
Alignment:
Q  239 cacttagtgggataaggcttgcttgttgt 267  Q
    |||||||||||||||||||||||||||||    
T  31339775 cacttagtgggataaggcttgcttgttgt 31339803  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 229 - 269
Target Start/End: Original strand, 49416948 - 49416988
Alignment:
Q  229 aagccgatctcacttagtgggataaggcttgcttgttgttg 269  Q
    ||||||| | ||||||||||||||||||||| |||||||||    
T  49416948 aagccgaccccacttagtgggataaggcttggttgttgttg 49416988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 234 - 269
Target Start/End: Complemental strand, 10516785 - 10516750
Alignment:
Q  234 gatctcacttagtgggataaggcttgcttgttgttg 269  Q
    |||||||||||||||||||||||||| |||||||||    
T  10516785 gatctcacttagtgggataaggcttggttgttgttg 10516750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 267
Target Start/End: Original strand, 43970022 - 43970059
Alignment:
Q  230 agccgatctcacttagtgggataaggcttgcttgttgt 267  Q
    ||||||||||||||||| |||||||||||| |||||||    
T  43970022 agccgatctcacttagttggataaggcttggttgttgt 43970059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 237 - 269
Target Start/End: Complemental strand, 12882078 - 12882046
Alignment:
Q  237 ctcacttagtgggataaggcttgcttgttgttg 269  Q
    ||||||||||||||||||||||| |||||||||    
T  12882078 ctcacttagtgggataaggcttggttgttgttg 12882046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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