View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0559_low_16 (Length: 377)
Name: NF0559_low_16
Description: NF0559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0559_low_16 |
 | |
|
| [»] scaffold0036 (1 HSPs) |
| | |
|
| [»] scaffold0214 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 331; Significance: 0; HSPs: 12)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 4 - 346
Target Start/End: Complemental strand, 11897290 - 11896948
Alignment:
| Q |
4 |
gcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcgacttgttcccgttccaaagtatagagtaa |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
11897290 |
gcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttccaaagtatagagtaa |
11897191 |
T |
|
| Q |
104 |
ctaggagaagctacgcaatgcatgatgagcttgatggtgatgttcggaaatccaaaatcatggaggcagttgcttaggaaatcccagttgacgttgtcga |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |
|
|
| T |
11897190 |
ctaggagaagctacgcaatgcatgatgagcttgatggtgatgttcggaaatccaaaatcatggaggcagttgcttaggaaatcctagttgacgttgtcaa |
11897091 |
T |
|
| Q |
204 |
aagctttctccaagtcaagcttgtaagctacgtaacccttcttccttttagagtgcttcatgaaatgaataatttcctgcaaaacaatagagttatctgc |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11897090 |
aagctttctccaagtcaagcttgtaagctacgtaacccttcttccttttagagtgcttcatgaaatgaataatttcctgcaaaacaatagagttatctgc |
11896991 |
T |
|
| Q |
304 |
agtgcccctaccaggcagaaagctgctttgatagggaccaata |
346 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11896990 |
agtgcccctaccaggcagaaagctgctttgatagggaccaata |
11896948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 4 - 346
Target Start/End: Original strand, 26432703 - 26433045
Alignment:
| Q |
4 |
gcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcgacttgttcccgttccaaagtatagagtaa |
103 |
Q |
| |
|
||||| |||||| |||||||||||||| ||||||||||||||||| ||||||||||| ||||||| |||| |||||||||| ||||||||||||||||| |
|
|
| T |
26432703 |
gcaaatgatgaagagataaggggacaatggatcaccttgtcggagaccatgagaaggtttgaaagacggcaacttgttcccattccaaagtatagagtag |
26432802 |
T |
|
| Q |
104 |
ctaggagaagctacgcaatgcatgatgagcttgatggtgatgttcggaaatccaaaatcatggaggcagttgcttaggaaatcccagttgacgttgtcga |
203 |
Q |
| |
|
| | |||| || |||||||||||||| ||||||||||||| ||||| |||||||||||||||||||||||||| || ||||||||||||||||| | |
|
|
| T |
26432803 |
tttgatgaagagacacaatgcatgatgagtttgatggtgatgtctggaaacccaaaatcatggaggcagttgcttagaaattcccagttgacgttgtcaa |
26432902 |
T |
|
| Q |
204 |
aagctttctccaagtcaagcttgtaagctacgtaacccttcttccttttagagtgcttcatgaaatgaataatttcctgcaaaacaatagagttatctgc |
303 |
Q |
| |
|
|||||||||| | ||||||||| |||||||| ||||||| ||||| || || |||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
26432903 |
aagctttctctagatcaagcttgaaagctacgaaaccctttttcctcttcgatctcttcatgaaatgaaaaatttcctgcaaaacaatagagttatctgc |
26433002 |
T |
|
| Q |
304 |
agtgcccctaccaggcagaaagctgctttgatagggaccaata |
346 |
Q |
| |
|
|| |||||||||||||| || |||||||||||||| |||||| |
|
|
| T |
26433003 |
ggtacccctaccaggcaggaaactgctttgataggggccaata |
26433045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 119 - 333
Target Start/End: Complemental strand, 23424525 - 23424311
Alignment:
| Q |
119 |
caatgcatgatgagcttgatggtgatgttcggaaatccaaaatcatggaggcagttgcttaggaaatcccagttgacgttgtcgaaagctttctccaagt |
218 |
Q |
| |
|
||||| |||||||||||||||||||||| ||||| ||||| || || ||||| | ||||||||||| |||| || ||||| ||||||||||||| |
|
|
| T |
23424525 |
caatgtatgatgagcttgatggtgatgtctggaaaaccaaattcctgaaggcaagaattaaggaaatcccatctgacattatcgaatgctttctccaagt |
23424426 |
T |
|
| Q |
219 |
caagcttgtaagctacgtaacccttcttccttttagagtgcttcatgaaatgaataatttcctgcaaaacaatagagttatctgcagtgcccctaccagg |
318 |
Q |
| |
|
| |||||| |||| || ||||| |||||||| || || | | ||||||| ||||||||||||||||||||||| |||||||| | ||| ||||||| ||| |
|
|
| T |
23424425 |
ctagcttgaaagcaacataacctttcttcctctttgatttcctcatgaagtgaataatttcctgcaaaacaattgagttatcagaagttcccctactagg |
23424326 |
T |
|
| Q |
319 |
cagaaagctgctttg |
333 |
Q |
| |
|
|||||| |||||||| |
|
|
| T |
23424325 |
cagaaatctgctttg |
23424311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 122 - 342
Target Start/End: Original strand, 11889865 - 11890085
Alignment:
| Q |
122 |
tgcatgatgagcttgatggtgatgttcggaaatccaaaatcatggaggcagttgcttaggaaatcccagttgacgttgtcgaaagctttctccaagtcaa |
221 |
Q |
| |
|
|||||||||||||| ||||| || | || || ||||| ||||||||||| |||| ||||||||||||||| || || ||||||||||| | ||||| |
|
|
| T |
11889865 |
tgcatgatgagctttatggtaatatctgggaaaccaaagtcatggaggcaagcacttaagaaatcccagttgacattatcaaaagctttctctaggtcaa |
11889964 |
T |
|
| Q |
222 |
gcttgtaagctacgtaacccttcttccttttagagtgcttcatgaaatgaataatttcctgcaaaacaatagagttatctgcagtgcccctaccaggcag |
321 |
Q |
| |
|
| ||| ||||||| || || |||||| | ||||| || ||| || || | |||||||||||||||||||| ||| || || ||||||||||| ||||| |
|
|
| T |
11889965 |
gtttgaaagctacatagcctttcttcttcttagatctctacataaagtgtacaatttcctgcaaaacaatagtgttgtcagccgtgcccctacctggcag |
11890064 |
T |
|
| Q |
322 |
aaagctgctttgatagggacc |
342 |
Q |
| |
|
||||||||||| |||||||| |
|
|
| T |
11890065 |
gaagctgctttggtagggacc |
11890085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 119 - 346
Target Start/End: Original strand, 17718481 - 17718708
Alignment:
| Q |
119 |
caatgcatgatgagcttgatggtgatgttcggaaatccaaaatcatggaggcagttgcttaggaaatcccagttgacgttgtcgaaagctttctccaagt |
218 |
Q |
| |
|
||||||||||||||||||||||||| || ||| || |||||||| || || || | | || |||||||| ||||| || || || |||||||| | || |
|
|
| T |
17718481 |
caatgcatgatgagcttgatggtgacgtccgggaaaccaaaatcctgcagacaagagttaagaaaatcccaattgacattatcaaaggctttctcaaggt |
17718580 |
T |
|
| Q |
219 |
caagcttgtaagctacgtaacccttcttccttttagagtgcttcatgaaatgaataatttcctgcaaaacaatagagttatctgcagtgcccctaccagg |
318 |
Q |
| |
|
| |||||| |||| || ||||| || ||| | ||||| ||||| ||||||| ||||||||||||||||| |||||||| | ||| ||||||||||| |
|
|
| T |
17718581 |
ctagcttgaaagccacataaccttttttcttcttagatcttctcatgtaatgaatgatttcctgcaaaacaatggagttatcagaagttcccctaccagg |
17718680 |
T |
|
| Q |
319 |
cagaaagctgctttgatagggaccaata |
346 |
Q |
| |
|
||||||||||||||| || || |||||| |
|
|
| T |
17718681 |
cagaaagctgctttggtaagggccaata |
17718708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 119 - 346
Target Start/End: Original strand, 19019710 - 19019937
Alignment:
| Q |
119 |
caatgcatgatgagcttgatggtgatgttcggaaatccaaaatcatggaggcagttgcttaggaaatcccagttgacgttgtcgaaagctttctccaagt |
218 |
Q |
| |
|
||||||||||||||||||||||||| || ||| || |||||||| || || || | | || |||||||| ||||| || || || |||||||| | || |
|
|
| T |
19019710 |
caatgcatgatgagcttgatggtgacgtccgggaaaccaaaatcctgcagacaagagttaagaaaatcccaattgacattatcaaaggctttctcaaggt |
19019809 |
T |
|
| Q |
219 |
caagcttgtaagctacgtaacccttcttccttttagagtgcttcatgaaatgaataatttcctgcaaaacaatagagttatctgcagtgcccctaccagg |
318 |
Q |
| |
|
| |||||| |||| || ||||| || ||| | ||||| ||||| ||||||| ||||||||||||||||| |||||||| | ||| ||||||||||| |
|
|
| T |
19019810 |
ctagcttgaaagccacataaccttttttcttcttagatcttctcatgtaatgaatgatttcctgcaaaacaatggagttatcagaagttcccctaccagg |
19019909 |
T |
|
| Q |
319 |
cagaaagctgctttgatagggaccaata |
346 |
Q |
| |
|
||||||||||||||| || || |||||| |
|
|
| T |
19019910 |
cagaaagctgctttggtaagggccaata |
19019937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 119 - 346
Target Start/End: Original strand, 38647305 - 38647532
Alignment:
| Q |
119 |
caatgcatgatgagcttgatggtgatgttcggaaatccaaaatcatggaggcagttgcttaggaaatcccagttgacgttgtcgaaagctttctccaagt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| ||||||||||| ||||| | ||||| ||||||||||| || || |||||||| |||| || |
|
|
| T |
38647305 |
caatgcatgatgagcttgatggtgatgtctggaaaaccaaaatcatgcaggcaagaattaaggaagtcccagttgacattatcaaaagctttttccaggt |
38647404 |
T |
|
| Q |
219 |
caagcttgtaagctacgtaacccttcttccttttagagtgcttcatgaaatgaataatttcctgcaaaacaatagagttatctgcagtgcccctaccagg |
318 |
Q |
| |
|
|||| ||| | | ||| |||||||| || |||| || | |||||||||| | |||||||||||||||||| || ||||| | || || |||||||| |
|
|
| T |
38647405 |
caagtttgaatgttacataaccctttttatttttggattttctcatgaaatgtacaatttcctgcaaaacaattgaattatcagatgttcctctaccagg |
38647504 |
T |
|
| Q |
319 |
cagaaagctgctttgatagggaccaata |
346 |
Q |
| |
|
|||||| ||||||||||| | |||||| |
|
|
| T |
38647505 |
cagaaaaatgctttgatagaggccaata |
38647532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 119 - 333
Target Start/End: Original strand, 53608423 - 53608637
Alignment:
| Q |
119 |
caatgcatgatgagcttgatggtgatgttcggaaatccaaaatcatggaggcagttgcttaggaaatcccagttgacgttgtcgaaagctttctccaagt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||| || || |||||||| || ||||| | || |||||||| ||||| || || ||||||||||| | | |
|
|
| T |
53608423 |
caatgcatgatgagcttgatggtgatgtctgggaaaccaaaatcctgtaggcaaaaattaagaaaatcccaattgacattatcaaaagctttctcaagat |
53608522 |
T |
|
| Q |
219 |
caagcttgtaagctacgtaacccttcttccttttagagtgcttcatgaaatgaataatttcctgcaaaacaatagagttatctgcagtgcccctaccagg |
318 |
Q |
| |
|
| |||||| |||| || || || || ||| | || || ||||| ||||||||||||||||||||||||| |||||||| | ||| ||||||||||| |
|
|
| T |
53608523 |
cgagcttgaaagccacatagccttttttcttctttgatcttttcatataatgaataatttcctgcaaaacaatggagttatcagaagttcccctaccagg |
53608622 |
T |
|
| Q |
319 |
cagaaagctgctttg |
333 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
53608623 |
cagaaagctgctttg |
53608637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 261 - 342
Target Start/End: Original strand, 49150035 - 49150116
Alignment:
| Q |
261 |
tcatgaaatgaataatttcctgcaaaacaatagagttatctgcagtgcccctaccaggcagaaagctgctttgatagggacc |
342 |
Q |
| |
|
|||||||||||| |||||||||||||||||| ||||| || ||||||||||||||||||||| ||||| | ||||||||| |
|
|
| T |
49150035 |
tcatgaaatgaacaatttcctgcaaaacaattgagttgtcattagtgcccctaccaggcagaaaactgctctaatagggacc |
49150116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 206 - 346
Target Start/End: Original strand, 15473656 - 15473795
Alignment:
| Q |
206 |
gctttctccaagtcaagcttgtaagctacgtaacccttcttccttttagagtgcttcatgaaatgaataatttcctgcaaaacaatagagttatctgcag |
305 |
Q |
| |
|
||||| |||| ||||||| || |||| || |||||||| |||||||| || ||||| ||||| | |||||||||||||||||| |||||||| | || |
|
|
| T |
15473656 |
gctttttccaggtcaagcctgaaagccacataaccctttttccttttggatcttttcataaaatgtacaatttcctgcaaaacaattgagttatcagaag |
15473755 |
T |
|
| Q |
306 |
tgcccctaccaggcagaaagctgctttgatagggaccaata |
346 |
Q |
| |
|
| ||| ||||||||||||| || ||||||||||| |||||| |
|
|
| T |
15473756 |
taccc-taccaggcagaaaactactttgataggggccaata |
15473795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 275 - 345
Target Start/End: Original strand, 3659894 - 3659964
Alignment:
| Q |
275 |
atttcctgcaaaacaatagagttatctgcagtgcccctaccaggcagaaagctgctttgatagggaccaat |
345 |
Q |
| |
|
||||||||||||||||| || || || | |||||||||||||| ||||| || ||||||||||| ||||| |
|
|
| T |
3659894 |
atttcctgcaaaacaatcgaattgtcagtggtgcccctaccaggtagaaaactactttgataggggccaat |
3659964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 346
Target Start/End: Original strand, 55025080 - 55025149
Alignment:
| Q |
277 |
ttcctgcaaaacaatagagttatctgcagtgcccctaccaggcagaaagctgctttgatagggaccaata |
346 |
Q |
| |
|
||||||||||||||| || || || | |||||||||||||| ||||| || ||||||||||| |||||| |
|
|
| T |
55025080 |
ttcctgcaaaacaattgaattgtcagtggtgcccctaccaggtagaaaactactttgataggggccaata |
55025149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 327; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 4 - 346
Target Start/End: Original strand, 23132590 - 23132932
Alignment:
| Q |
4 |
gcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcgacttgttcccgttccaaagtatagagtaa |
103 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
23132590 |
gcaaaggatgaaaagataaggggacaacgtatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttccaaagtatagagtaa |
23132689 |
T |
|
| Q |
104 |
ctaggagaagctacgcaatgcatgatgagcttgatggtgatgttcggaaatccaaaatcatggaggcagttgcttaggaaatcccagttgacgttgtcga |
203 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23132690 |
ctaggagaagctacgcaatgcatgatgaacttgatggtgatgttcggaaatccaaaatcatggaggcagttgcttaggaaatcccagttgacgttgtcga |
23132789 |
T |
|
| Q |
204 |
aagctttctccaagtcaagcttgtaagctacgtaacccttcttccttttagagtgcttcatgaaatgaataatttcctgcaaaacaatagagttatctgc |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23132790 |
aagctttctccaagtcaagcttgtaagctacgtaacccttcttccttttagagtgcttcatgaaatgaataatttcctgcaaaacaatagagttatctgc |
23132889 |
T |
|
| Q |
304 |
agtgcccctaccaggcagaaagctgctttgatagggaccaata |
346 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
23132890 |
agtgcccctaccaagcagaaagctgctttgatagggaccaata |
23132932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 179 - 346
Target Start/End: Complemental strand, 14759889 - 14759722
Alignment:
| Q |
179 |
aggaaatcccagttgacgttgtcgaaagctttctccaagtcaagcttgtaagctacgtaacccttcttccttttagagtgcttcatgaaatgaataattt |
278 |
Q |
| |
|
||||| |||||||| || ||||| |||||||| |||| ||||| ||| ||||||| | ||||||||| |||| || | ||||||||||||| |||| |
|
|
| T |
14759889 |
aggaattcccagtttactttgtcaaaagctttttccaggtcaattttgaaagctacaaaccccttcttctttttggatctcctcatgaaatgaattattt |
14759790 |
T |
|
| Q |
279 |
cctgcaaaacaatagagttatctgcagtgcccctaccaggcagaaagctgctttgatagggaccaata |
346 |
Q |
| |
|
||||||||||||| |||||||| | ||||||||| ||||||||||| |||||||| ||||| |||||| |
|
|
| T |
14759789 |
cctgcaaaacaatggagttatcagaagtgcccctcccaggcagaaaactgctttggtaggggccaata |
14759722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 179 - 346
Target Start/End: Complemental strand, 26973420 - 26973253
Alignment:
| Q |
179 |
aggaaatcccagttgacgttgtcgaaagctttctccaagtcaagcttgtaagctacgtaacccttcttccttttagagtgcttcatgaaatgaataattt |
278 |
Q |
| |
|
||||| |||||||| || ||||| |||||||| |||| |||||| ||| ||||||| | ||||||||| |||| || | ||||||||||||| |||| |
|
|
| T |
26973420 |
aggaattcccagtttactttgtcaaaagctttttccaggtcaagtttgaaagctacaaaccccttcttctttttggatctcctcatgaaatgaattattt |
26973321 |
T |
|
| Q |
279 |
cctgcaaaacaatagagttatctgcagtgcccctaccaggcagaaagctgctttgatagggaccaata |
346 |
Q |
| |
|
||||||||||||| |||||||| | |||||||| ||||||||||| |||||||| ||||| |||||| |
|
|
| T |
26973320 |
cctgcaaaacaatggagttatcagaggtgcccctcccaggcagaaaactgctttggtaggggccaata |
26973253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 5 - 346
Target Start/End: Complemental strand, 26587365 - 26587024
Alignment:
| Q |
5 |
caaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcgacttgttcccgttccaaagtatagagtaac |
104 |
Q |
| |
|
||||| ||||| || || || ||||| || |||||||||||||||||||||| ||||||||| || ||| | ||||| || || ||||| || | | | |
|
|
| T |
26587365 |
caaagaatgaagaggtagggagacaatgggtcaccttgtcggaggccatgagtaggcttgaaggggggcaatttgttaccatttcaaaggatggtgaagg |
26587266 |
T |
|
| Q |
105 |
taggagaagctacgcaatgcatgatgagcttgatggtgatgttcggaaatccaaaatcatggaggcagttgcttaggaaatcccagttgacgttgtcgaa |
204 |
Q |
| |
|
||| |||| ||||||||||||||||| ||||||| | || |||||||| |||||||| || || | | || || |||||||| || ||||| || |
|
|
| T |
26587265 |
tagatgaagtgacgcaatgcatgatgagtttgatggcggcgtcaggaaatccgaaatcatgaagacaagtattaagaaactcccagttaacattgtcaaa |
26587166 |
T |
|
| Q |
205 |
agctttctccaagtcaagcttgtaagctacgtaacccttcttccttttagagtgcttcatgaaatgaataatttcctgcaaaacaatagagttatctgca |
304 |
Q |
| |
|
|||||||| | ||||||||| |||| || || || |||||||| ||||| | | |||| || ||| ||||||||||||||||| |||||| || | |
|
|
| T |
26587165 |
tgctttctcaagatcaagcttgaaagcaacatagcctttcttcctcttagatttcctcataaagtgagcaatttcctgcaaaacaaaagagttgtcataa |
26587066 |
T |
|
| Q |
305 |
gtgcccctaccaggcagaaagctgctttgatagggaccaata |
346 |
Q |
| |
|
||||||||||| |||||||| ||| |||| |||||||||||| |
|
|
| T |
26587065 |
gtgcccctacctggcagaaaactgatttggtagggaccaata |
26587024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 274 - 346
Target Start/End: Complemental strand, 38348339 - 38348267
Alignment:
| Q |
274 |
aatttcctgcaaaacaatagagttatctgcagtgcccctaccaggcagaaagctgctttgatagggaccaata |
346 |
Q |
| |
|
|||||||||||||| |||||| ||||| | ||| |||||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
38348339 |
aatttcctgcaaaataatagaattatcagaagttcccctaccaggcaggaagctgctttgataggggccaata |
38348267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 311; Significance: 1e-175; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 4 - 346
Target Start/End: Complemental strand, 20284991 - 20284649
Alignment:
| Q |
4 |
gcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcgacttgttcccgttccaaagtatagagtaa |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| || |||||||||||||||||||||||| |
|
|
| T |
20284991 |
gcaaaggatgaaaagataaggggacaacggatcaccttgtcgcaggccatgagaaggctcgaaaggcggcaaccctttcccgttccaaagtatagagtaa |
20284892 |
T |
|
| Q |
104 |
ctaggagaagctacgcaatgcatgatgagcttgatggtgatgttcggaaatccaaaatcatggaggcagttgcttaggaaatcccagttgacgttgtcga |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
20284891 |
ctaggagaagctacgcaatgcatgatgagcttgatggtgatgttcggaaatccaaaatcatggaggcagttgcttagaaaatcccagttgacgttgtcga |
20284792 |
T |
|
| Q |
204 |
aagctttctccaagtcaagcttgtaagctacgtaacccttcttccttttagagtgcttcatgaaatgaataatttcctgcaaaacaatagagttatctgc |
303 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20284791 |
aagctttctccaagtcaagcttgtaagctacgtaacccttcttccttttagagtgtttcatgaaatgaataatttcctgcaaaacaatagagttatctgc |
20284692 |
T |
|
| Q |
304 |
agtgcccctaccaggcagaaagctgctttgatagggaccaata |
346 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20284691 |
agtgcccctaccaggcagaaagctgctttgatagggaccaata |
20284649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 10 - 346
Target Start/End: Original strand, 50236579 - 50236915
Alignment:
| Q |
10 |
gatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcgacttgttcccgttccaaagtatagagtaactagga |
109 |
Q |
| |
|
||||||||| |||||||| | ||||||||||| || ||||||||||| |||||||||||| ||| ||||||||||||||| | |||||||| | || |
|
|
| T |
50236579 |
gatgaaaaggtaaggggaaagcggatcaccttatctgaggccatgagtaggcttgaaagggggcatcttgttcccgttccataagatagagtaggtgggt |
50236678 |
T |
|
| Q |
110 |
gaagctacgcaatgcatgatgagcttgatggtgatgttcggaaatccaaaatcatggaggcagttgcttaggaaatcccagttgacgttgtcgaaagctt |
209 |
Q |
| |
|
|| | || |||||||||||||| ||| ||||||||| ||||||||||||||||||||| || | ||||| ||| | || || || || ||||| | |
|
|
| T |
50236679 |
gaggagacacaatgcatgatgagtttggtggtgatgtccggaaatccaaaatcatggagacaagaattgaggaagtcctaattaacattatcaaaagcct |
50236778 |
T |
|
| Q |
210 |
tctccaagtcaagcttgtaagctacgtaacccttcttccttttagagtgct-tcatgaaatgaataatttcctgcaaaacaatagagttatctgcagtgc |
308 |
Q |
| |
|
| ||||| |||||||| ||||||| || |||||||| ||||| || | | |||||||||||| |||||||||||||||||| |||||||| | || | |
|
|
| T |
50236779 |
tttccaaatcaagcttaaaagctacatagcccttctttctttt-gaatcttctcatgaaatgaacaatttcctgcaaaacaatcgagttatcagatgtac |
50236877 |
T |
|
| Q |
309 |
ccctaccaggcagaaagctgctttgatagggaccaata |
346 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| |
|
|
| T |
50236878 |
ccctaccaggcagaaaaatgctttgatagggaccaata |
50236915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 5 - 346
Target Start/End: Complemental strand, 50452036 - 50451695
Alignment:
| Q |
5 |
caaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcgacttgttcccgttccaaagtatagagtaac |
104 |
Q |
| |
|
||||| ||||| || ||||| || | |||||||||||||||||||||||| | ||| |||||| ||||| ||||| || ||||| | |||||| || |
|
|
| T |
50452036 |
caaagaatgaagaggtaaggagaaagcggatcaccttgtcggaggccatgtgtaggtttgaaatgcggcattttgttaccattccataagatagagaaag |
50451937 |
T |
|
| Q |
105 |
taggagaagct-acgcaatgcatgatgagcttgatggtgatgttcggaaatccaaaatcatggaggcagttgcttaggaaatcccagttgacgttgtcga |
203 |
Q |
| |
|
| |||| || | || ||||||||||| || ||||||||||||| |||||| ||||| ||||| ||||| | || |||||||| ||||| || || | |
|
|
| T |
50451936 |
t-ggaggaggtgacacaatgcatgataagtttgatggtgatgtccggaaaaccaaactcatgaaggcaagaattaagaaaatcccatttgacattatcaa |
50451838 |
T |
|
| Q |
204 |
aagctttctccaagtcaagcttgtaagctacgtaacccttcttccttttagagtgcttcatgaaatgaataatttcctgcaaaacaatagagttatctgc |
303 |
Q |
| |
|
| ||||| ||||| || |||||| |||| || ||||| || ||| | ||||| | | |||| ||||||||||||||||||||||||||||||||||| | |
|
|
| T |
50451837 |
atgctttttccaaatcgagcttgaaagcaacataaccttttttcttcttagacttcctcataaaatgaataatttcctgcaaaacaatagagttatcaga |
50451738 |
T |
|
| Q |
304 |
agtgcccctaccaggcagaaagctgctttgatagggaccaata |
346 |
Q |
| |
|
||| ||||||| |||||||||||||||||| || || |||||| |
|
|
| T |
50451737 |
agttcccctactaggcagaaagctgctttggtaagggccaata |
50451695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 123 - 346
Target Start/End: Original strand, 31325079 - 31325302
Alignment:
| Q |
123 |
gcatgatgagcttgatggtgatgttcggaaatccaaaatcatggaggcagttgcttaggaaatcccagttgacgttgtcgaaagctttctccaagtcaag |
222 |
Q |
| |
|
|||||||||||||||| ||||||| ||||| || |||||||||||||| | ||||||||||| ||||| || || ||||||||||||| |||||| |
|
|
| T |
31325079 |
gcatgatgagcttgattgtgatgtctggaaaaccgaaatcatggaggcaagaattaaggaaatcccaattgacattatcaaaagctttctccaggtcaag |
31325178 |
T |
|
| Q |
223 |
cttgtaagctacgtaacccttcttccttttagagtgcttcatgaaatgaataatttcctgcaaaacaatagagttatctgcagtgcccctaccaggcaga |
322 |
Q |
| |
|
||| |||||||||||||||||||| | || || ||||||| || | |||||||||||||||||| |||||||| | ||| ||||||||||||||| |
|
|
| T |
31325179 |
tttgaaagctacgtaacccttcttcttcttggatcttctcatgaagtggacaatttcctgcaaaacaattgagttatcagaagttcccctaccaggcaga |
31325278 |
T |
|
| Q |
323 |
aagctgctttgatagggaccaata |
346 |
Q |
| |
|
|| |||||| | ||||| |||||| |
|
|
| T |
31325279 |
aaactgcttcggtaggggccaata |
31325302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 119 - 346
Target Start/End: Complemental strand, 43298385 - 43298158
Alignment:
| Q |
119 |
caatgcatgatgagcttgatggtgatgttcggaaatccaaaatcatggaggcagttgcttaggaaatcccagttgacgttgtcgaaagctttctccaagt |
218 |
Q |
| |
|
||||||||||| ||||| ||||||||||||| |||||||||||| |||||| |||| |||||||| ||||| || | |||||||||| || || |
|
|
| T |
43298385 |
caatgcatgataagcttcatggtgatgttcgagaatccaaaatcaatgaggcaagaatttagaaaatcccatttgacattattaaaagctttcttcaggt |
43298286 |
T |
|
| Q |
219 |
caagcttgtaagctacgtaacccttcttccttttagagtgcttcatgaaatgaataatttcctgcaaaacaatagagttatctgcagtgcccctaccagg |
318 |
Q |
| |
|
|||| ||| | ||||| || ||||||||| ||||||| |||| ||||||| ||||||||||||||||| |||||||| | ||| ||||||| ||| |
|
|
| T |
43298285 |
caagtttgaaggctacatatcccttcttctttttagatcttctcataaaatgaactatttcctgcaaaacaattgagttatcagaagttcccctactagg |
43298186 |
T |
|
| Q |
319 |
cagaaagctgctttgatagggaccaata |
346 |
Q |
| |
|
|||||| |||||||| || || |||||| |
|
|
| T |
43298185 |
cagaaaactgctttggtaagggccaata |
43298158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 116 - 338
Target Start/End: Original strand, 10103800 - 10104022
Alignment:
| Q |
116 |
acgcaatgcatgatgagcttgatggtgatgttcggaaatccaaaatcatggaggcagttgcttaggaaatcccagttgacgttgtcgaaagctttctcca |
215 |
Q |
| |
|
|||||||||||||| || ||||||||||| | | ||||||||| || || ||||| | ||||| ||||| |||| ||||| | || |||||| | |
|
|
| T |
10103800 |
acgcaatgcatgataagtttgatggtgatatctgaaaatccaaactcttgaaggcaagaattaaggaagtcccatctgacattgtcaatagttttctcta |
10103899 |
T |
|
| Q |
216 |
agtcaagcttgtaagctacgtaacccttcttccttttagagtgcttcatgaaatgaataatttcctgcaaaacaatagagttatctgcagtgcccctacc |
315 |
Q |
| |
|
| || |||||| |||| || || ||||||||| | ||||| | | | ||||||| ||||||||||||||||||||| |||||||| || || |||||||| |
|
|
| T |
10103900 |
aatcgagcttgaaagcaacatagcccttcttcttcttagatttccttatgaaataaataatttcctgcaaaacaattgagttatcagccgttcccctacc |
10103999 |
T |
|
| Q |
316 |
aggcagaaagctgctttgatagg |
338 |
Q |
| |
|
|||||||||||| |||||||||| |
|
|
| T |
10104000 |
aggcagaaagctactttgatagg |
10104022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 261 - 346
Target Start/End: Complemental strand, 1524852 - 1524767
Alignment:
| Q |
261 |
tcatgaaatgaataatttcctgcaaaacaatagagttatctgcagtgcccctaccaggcagaaagctgctttgatagggaccaata |
346 |
Q |
| |
|
||||||| || | ||||||||||||||||||||| ||||| | ||| ||||||||||||||||| || ||||||||||| |||||| |
|
|
| T |
1524852 |
tcatgaagtggacaatttcctgcaaaacaatagaattatcagaagttcccctaccaggcagaaaactactttgataggggccaata |
1524767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 260 - 346
Target Start/End: Complemental strand, 23465224 - 23465137
Alignment:
| Q |
260 |
ttcatgaaatgaataatttcctgcaaaacaata-gagttatctgcagtgcccctaccaggcagaaagctgctttgatagggaccaata |
346 |
Q |
| |
|
||||||||||||| |||||||| ||||| || | ||||| || | ||||||||||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
23465224 |
ttcatgaaatgaacaatttcctccaaaaaaaaatgagttgtcagtagtgcccctaccaggcagaaaactgctctgatagggaccaata |
23465137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 119 - 171
Target Start/End: Original strand, 5193219 - 5193271
Alignment:
| Q |
119 |
caatgcatgatgagcttgatggtgatgttcggaaatccaaaatcatggaggca |
171 |
Q |
| |
|
||||||||||| ||||||||||||||||||| ||||||||||||| ||||||| |
|
|
| T |
5193219 |
caatgcatgataagcttgatggtgatgttcgtaaatccaaaatcaaggaggca |
5193271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 279; Significance: 1e-156; HSPs: 11)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 4 - 346
Target Start/End: Original strand, 14653685 - 14654027
Alignment:
| Q |
4 |
gcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcgacttgttcccgttccaaagtatagagtaa |
103 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| |
|
|
| T |
14653685 |
gcaaaggatgaaaaaataaggggacaacggatcaccttgttggaggccatgagaaggcttgaaaggcggcaacttgttcccattccaaagtatagagtaa |
14653784 |
T |
|
| Q |
104 |
ctaggagaagctacgcaatgcatgatgagcttgatggtgatgttcggaaatccaaaatcatggaggcagttgcttaggaaatcccagttgacgttgtcga |
203 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |
|
|
| T |
14653785 |
ctcggagaagctacgcaatgcatgatgagcttgatggtgatgttaggaaatccaaaatcatggaggcagttgtttaggaattcccagttgacgttgtcga |
14653884 |
T |
|
| Q |
204 |
aagctttctccaagtcaagcttgtaagctacgtaacccttcttccttttagagtgcttcatgaaatgaataatttcctgcaaaacaatagagttatctgc |
303 |
Q |
| |
|
| ||||||||||| ||||||||| |||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14653885 |
atgctttctccaaatcaagcttgaaagctacgtatcccttcttcctcttagatcgcttcatgaaatgaataatttcctgcaaaacaatagagttatctgc |
14653984 |
T |
|
| Q |
304 |
agtgcccctaccaggcagaaagctgctttgatagggaccaata |
346 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
14653985 |
agtgcccctaccaggcagaaaactgctttgatagggaccaata |
14654027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 8 - 346
Target Start/End: Original strand, 35135231 - 35135569
Alignment:
| Q |
8 |
aggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcgacttgttcccgttccaaagtatagagtaactag |
107 |
Q |
| |
|
||||||||||||||||| |||||||| |||||||| || || ||||||| |||||||||||| | |||||| || ||||| | || ||||| || | |
|
|
| T |
35135231 |
aggatgaaaagataaggagacaacgggtcaccttgacgaagtccatgagtaggcttgaaaggagagagcttgtttccattccataaaattgagtagcttg |
35135330 |
T |
|
| Q |
108 |
gagaagctacgcaatgcatgatgagcttgatggtgatgttcggaaatccaaaatcatggaggcagttgcttaggaaatcccagttgacgttgtcgaaagc |
207 |
Q |
| |
|
| || | || |||||||||||||| |||||||| |||| || || || ||||| |||||||| ||| ||||| ||||||||||||||||| ||||| |
|
|
| T |
35135331 |
gtgaggtaacacaatgcatgatgagtttgatggtaatgtctgggaagccgaaatcctggaggcaaatgcgaaggaagtcccagttgacgttgtcaaaagc |
35135430 |
T |
|
| Q |
208 |
tttctccaagtcaagcttgtaagctacgtaacccttcttccttttagagtgcttcatgaaatgaataatttcctgcaaaacaatagagttatctgcagtg |
307 |
Q |
| |
|
|||||| || ||||||||| ||||||| |||||||||||||||||||| ||||||| || || || ||||||||||||||||| ||||| |||| || |
|
|
| T |
35135431 |
tttctctaaatcaagcttgaaagctacaaaacccttcttccttttagagcgcttcataaagtggattatttcctgcaaaacaatggagttgtctgaggta |
35135530 |
T |
|
| Q |
308 |
cccctaccaggcagaaagctgctttgatagggaccaata |
346 |
Q |
| |
|
||||||||||||| ||| |||||||| ||||||| |||| |
|
|
| T |
35135531 |
cccctaccaggcaaaaaactgctttggtagggactaata |
35135569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 8 - 346
Target Start/End: Complemental strand, 40328313 - 40327975
Alignment:
| Q |
8 |
aggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcgacttgttcccgttccaaagtatagagtaactag |
107 |
Q |
| |
|
||||||||||||||||| |||||||| |||||||| || || ||||||| |||||||||||| | |||||| || ||||| | || ||||| || | |
|
|
| T |
40328313 |
aggatgaaaagataaggagacaacgggtcaccttgacgaagtccatgagtaggcttgaaaggagaaagcttgtttccattccataaaattgagtagctcg |
40328214 |
T |
|
| Q |
108 |
gagaagctacgcaatgcatgatgagcttgatggtgatgttcggaaatccaaaatcatggaggcagttgcttaggaaatcccagttgacgttgtcgaaagc |
207 |
Q |
| |
|
| || | || |||||||||||||| |||||||| |||| || || || ||||| |||||||| ||| ||||| ||||||||||||||||| ||||| |
|
|
| T |
40328213 |
gtgaggtaacacaatgcatgatgagtttgatggtaatgtctgggaagccgaaatcctggaggcaaatgcgaaggaattcccagttgacgttgtcaaaagc |
40328114 |
T |
|
| Q |
208 |
tttctccaagtcaagcttgtaagctacgtaacccttcttccttttagagtgcttcatgaaatgaataatttcctgcaaaacaatagagttatctgcagtg |
307 |
Q |
| |
|
|||||| || ||||||||| ||||||| |||||||||||||||||||| ||||||| || || || ||||||||||||||||| ||||| |||| || |
|
|
| T |
40328113 |
tttctctaaatcaagcttgaaagctacaaaacccttcttccttttagagcgcttcataaagtggattatttcctgcaaaacaatggagttgtctgaggta |
40328014 |
T |
|
| Q |
308 |
cccctaccaggcagaaagctgctttgatagggaccaata |
346 |
Q |
| |
|
||||||||||| | ||| || ||||| |||||||||||| |
|
|
| T |
40328013 |
cccctaccaggaaaaaaactactttggtagggaccaata |
40327975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 8 - 346
Target Start/End: Complemental strand, 19265551 - 19265213
Alignment:
| Q |
8 |
aggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcgacttgttcccgttccaaagtatagagtaactag |
107 |
Q |
| |
|
||||||||||||||||| |||| ||| |||||||| || || ||||||| |||||||||||| | |||||| || ||||| | | ||||| || | |
|
|
| T |
19265551 |
aggatgaaaagataaggagacagcgggtcaccttgacgaagtccatgagtaggcttgaaaggagagagcttgtttccattccataacaaggagtagcttg |
19265452 |
T |
|
| Q |
108 |
gagaagctacgcaatgcatgatgagcttgatggtgatgttcggaaatccaaaatcatggaggcagttgcttaggaaatcccagttgacgttgtcgaaagc |
207 |
Q |
| |
|
| || | || |||||||||||||| |||||||| ||||| || || || ||||| |||||||| ||| ||||| ||| ||||||||||||| ||||| |
|
|
| T |
19265451 |
gtgaggtaacacaatgcatgatgagtttgatggtaatgtttgggaagccgaaatcctggaggcaaatgcgaaggaagtccaagttgacgttgtcaaaagc |
19265352 |
T |
|
| Q |
208 |
tttctccaagtcaagcttgtaagctacgtaacccttcttccttttagagtgcttcatgaaatgaataatttcctgcaaaacaatagagttatctgcagtg |
307 |
Q |
| |
|
|||||| || ||||||||| |||| || |||||||||||||||||||| ||||||| || || || ||||||||||||||||| ||||| ||| || |
|
|
| T |
19265351 |
tttctctaaatcaagcttgaaagccacaaaacccttcttccttttagagcgcttcataaagtggattatttcctgcaaaacaatggagttgtcttgggta |
19265252 |
T |
|
| Q |
308 |
cccctaccaggcagaaagctgctttgatagggaccaata |
346 |
Q |
| |
|
||||||||||||| ||| ||||||| |||||||||||| |
|
|
| T |
19265251 |
cccctaccaggcaaaaaattgctttggtagggaccaata |
19265213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 4 - 333
Target Start/End: Complemental strand, 573331 - 573002
Alignment:
| Q |
4 |
gcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcgacttgttcccgttccaaagtatagagtaa |
103 |
Q |
| |
|
|||||||||||| || ||||| || | |||||||||||||| ||||||||| ||||| || ||||| || ||||| || ||||| | |||||| | |
|
|
| T |
573331 |
gcaaaggatgaataggtaaggagagagcggatcaccttgtctgaggccatgggaaggtttaaaaggatgcattttgttaccattccataaaatagagaac |
573232 |
T |
|
| Q |
104 |
ctaggagaagctacgcaatgcatgatgagcttgatggtgatgttcggaaatccaaaatcatggaggcagttgcttaggaaatcccagttgacgttgtcga |
203 |
Q |
| |
|
| || || | || |||||||||| || ||||||||||||| ||||||||||| ||||| |||||| | ||||||||||| |||| || | | |
|
|
| T |
573231 |
gttggtgatgtgacataatgcatgataagtttgatggtgatgtctggaaatccaaactcatgaaggcaggaattaaggaaatcccatctgacattaccaa |
573132 |
T |
|
| Q |
204 |
aagctttctccaagtcaagcttgtaagctacgtaacccttcttccttttagagtgcttcatgaaatgaataatttcctgcaaaacaatagagttatctgc |
303 |
Q |
| |
|
||||||| |||||||| |||||| |||| || || ||||||||| |||| || | |||||||||||| |||||||||||||||||| |||||||| | |
|
|
| T |
573131 |
aagctttttccaagtcgagcttgaaagcaacataccccttcttcttttttgattttctcatgaaatgaacaatttcctgcaaaacaattgagttatcaga |
573032 |
T |
|
| Q |
304 |
agtgcccctaccaggcagaaagctgctttg |
333 |
Q |
| |
|
||| |||||||| ||||||| |||||||| |
|
|
| T |
573031 |
agtttccctaccatgcagaaaactgctttg |
573002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 179 - 346
Target Start/End: Complemental strand, 16322413 - 16322246
Alignment:
| Q |
179 |
aggaaatcccagttgacgttgtcgaaagctttctccaagtcaagcttgtaagctacgtaacccttcttccttttagagtgcttcatgaaatgaataattt |
278 |
Q |
| |
|
||||||||||| || || || || || ||||| |||| |||||||||| |||| ||||| ||||| |||||||| || | ||||| ||||| | ||||| |
|
|
| T |
16322413 |
aggaaatcccaattaacattatcaaacgctttttccaggtcaagcttgaaagccacgtagccctttttccttttggatcgtttcataaaatgtaaaattt |
16322314 |
T |
|
| Q |
279 |
cctgcaaaacaatagagttatctgcagtgcccctaccaggcagaaagctgctttgatagggaccaata |
346 |
Q |
| |
|
||||||||| ||| ||||| || ||||| ||||||||||| |||||||| ||||||||||| |||||| |
|
|
| T |
16322313 |
cctgcaaaataattgagttgtcagcagtacccctaccaggtagaaagctactttgataggggccaata |
16322246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 10 - 346
Target Start/End: Complemental strand, 177632 - 177296
Alignment:
| Q |
10 |
gatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcgacttgttcccgttccaaagtatagagtaactagga |
109 |
Q |
| |
|
|||||| || ||||| ||||| || |||||||||| || ||||||| |||||||| ||| ||| | ||||| || |||||||| | |||| | | | | |
|
|
| T |
177632 |
gatgaataggtaaggagacaaagggtcaccttgtcttagaccatgagtaggcttgataggaggccatttgtttccattccaaagaacagagaatgttgaa |
177533 |
T |
|
| Q |
110 |
gaagctacgcaatgcatgatgagcttgatggtgatgttcggaaatccaaaatcatggaggcagttgcttaggaaatcccagttgacgttgtcgaaagctt |
209 |
Q |
| |
|
|||| || |||||||||||||| ||||| || | ||| || |||||||| ||||| || || || || ||||| || || ||||| ||||||| |
|
|
| T |
177532 |
gaagtgacacaatgcatgatgagtttgattgtatcatccgggaaaccaaaatcttggagacacgatctaagaaactcccaattcacattgtcaaaagctt |
177433 |
T |
|
| Q |
210 |
tctccaagtcaagcttgtaagctacgtaacccttcttccttttagagtgcttcatgaaatgaataatttcctgcaaaacaatagagttatctgcagtgcc |
309 |
Q |
| |
|
|||| | ||||| ||| |||| |||||||| || |||||||| || | ||| ||||||| |||||||||||||||||||||||| || | |||||| |
|
|
| T |
177432 |
tctcaagatcaagtttgaaagcaacgtaaccttttttcctttttgatctccgcataaaatgaacaatttcctgcaaaacaatagagttgtcagaagtgcc |
177333 |
T |
|
| Q |
310 |
cctaccaggcagaaagctgctttgatagggaccaata |
346 |
Q |
| |
|
|||||| |||| || |||||||| |||||||||||| |
|
|
| T |
177332 |
cctaccttgcaggaaactgctttggtagggaccaata |
177296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 179 - 346
Target Start/End: Original strand, 42403400 - 42403567
Alignment:
| Q |
179 |
aggaaatcccagttgacgttgtcgaaagctttctccaagtcaagcttgtaagctacgtaacccttcttccttttagagtgcttcatgaaatgaataattt |
278 |
Q |
| |
|
||||| ||||||||||| || || || ||||| |||| |||||||||| | || || |||||||| |||||||| || ||||| ||||| ||||||| |
|
|
| T |
42403400 |
aggaattcccagttgacattatcaaacgctttttccaggtcaagcttgaaggccacataaccctttttccttttggatcttttcataaaatgtataattt |
42403499 |
T |
|
| Q |
279 |
cctgcaaaacaatagagttatctgcagtgcccctaccaggcagaaagctgctttgatagggaccaata |
346 |
Q |
| |
|
||||||||||||| || ||||| | ||| ||||||||||| ||||| || ||||| |||| |||||| |
|
|
| T |
42403500 |
cctgcaaaacaattgaattatcagaagtacccctaccaggtagaaaactactttggcaggggccaata |
42403567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 163
Target Start/End: Complemental strand, 26791460 - 26791301
Alignment:
| Q |
4 |
gcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcgacttgttcccgttccaaagtatagagtaa |
103 |
Q |
| |
|
|||||| || ||||| || ||||| | ||||||||| || | ||||||||||| ||||| |||||| ||| || | || || |||||||| |||||| | |
|
|
| T |
26791460 |
gcaaagaataaaaaggtacggggaaagcggatcaccctgcctgaggccatgagtaggctcgaaaggaggcaacctatttccattccaaagaatagagaag |
26791361 |
T |
|
| Q |
104 |
ctaggagaagctacgcaatgcatgatgagcttgatggtgatgttcggaaatccaaaatca |
163 |
Q |
| |
|
|| | |||| ||||||||||||||||||||||||||| | | ||| || ||||||||| |
|
|
| T |
26791360 |
ctggatgaagtaacgcaatgcatgatgagcttgatggtggtatccgggaagccaaaatca |
26791301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 8 - 69
Target Start/End: Original strand, 3779060 - 3779121
Alignment:
| Q |
8 |
aggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaagg |
69 |
Q |
| |
|
||||||||||||||||| |||| ||| |||||||| || || ||||||| |||||||||||| |
|
|
| T |
3779060 |
aggatgaaaagataaggagacagcgggtcaccttgacgaagtccatgagtaggcttgaaagg |
3779121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 275 - 345
Target Start/End: Complemental strand, 39012398 - 39012328
Alignment:
| Q |
275 |
atttcctgcaaaacaatagagttatctgcagtgcccctaccaggcagaaagctgctttgatagggaccaat |
345 |
Q |
| |
|
||||||||||||||||| || || || | |||||||||||||| ||||| || ||||||||||| ||||| |
|
|
| T |
39012398 |
atttcctgcaaaacaatcgaattgtcagtggtgcccctaccaggtagaaaactactttgataggggccaat |
39012328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 115; Significance: 2e-58; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 4 - 346
Target Start/End: Complemental strand, 7817274 - 7816932
Alignment:
| Q |
4 |
gcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcgacttgttcccgttccaaagtatagagtaa |
103 |
Q |
| |
|
|||||| |||||||| ||||| || || || ||||| |||| ||| ||||||| ||||||||||| || |||||||| ||||| | |||||||| |
|
|
| T |
7817274 |
gcaaagaatgaaaaggtaaggagataaagggtcaccctgtctgagaccatgagtaggcttgaaagaaggaagtttgttcccattccataaaatagagtag |
7817175 |
T |
|
| Q |
104 |
ctaggagaagctacgcaatgcatgatgagcttgatggtgatgttcggaaatccaaaatcatggaggcagttgcttaggaaatcccagttgacgttgtcga |
203 |
Q |
| |
|
| | || | ||| |||||||||||||||||||| ||||||| || || ||||||||||||||||| || ||||||||||| ||||||||||||| |
|
|
| T |
7817174 |
ttggaggatgatacacaatgcatgatgagcttgattgtgatgtcagggaaaccaaaatcatggaggcacgaactaaggaaatcccaattgacgttgtcga |
7817075 |
T |
|
| Q |
204 |
aagctttctccaagtcaagcttgtaagctacgtaacccttcttccttttagagtgcttcatgaaatgaataatttcctgcaaaacaatagagttatctgc |
303 |
Q |
| |
|
||||||| |||| |||||| ||| | ||||| | ||||||||||||||||| ||||||||||||| | ||||||||||||||||||||||||||||| |
|
|
| T |
7817074 |
aagctttttccaggtcaagtttgaatgctacaaaccccttcttccttttagaccgcttcatgaaatgcaaaatttcctgcaaaacaatagagttatctga |
7816975 |
T |
|
| Q |
304 |
agtgcccctaccaggcagaaagctgctttgatagggaccaata |
346 |
Q |
| |
|
||| ||||||||||||||||| |||||||| || || |||||| |
|
|
| T |
7816974 |
agtacccctaccaggcagaaaactgctttggtaagggccaata |
7816932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 31 - 346
Target Start/End: Original strand, 6641051 - 6641366
Alignment:
| Q |
31 |
cggatcaccttgtcggaggccatgagaaggcttgaaaggcggcgacttgttcccgttccaaagtatagagtaactaggagaagctacgcaatgcatgatg |
130 |
Q |
| |
|
||||||||||| |||||||||||||| ||||||||||| | | ||||| |||||||| | | ||||||| | | || | || |||| |||||| |
|
|
| T |
6641051 |
cggatcaccttttcggaggccatgagtgggcttgaaaggggacattttgtttccgttccataagagagagtaagtggctgaggagacacaatacatgata |
6641150 |
T |
|
| Q |
131 |
agcttgatggtgatgttcggaaatccaaaatcatggaggcagttgcttaggaaatcccagttgacgttgtcgaaagctttctccaagtcaagcttgtaag |
230 |
Q |
| |
|
|||||||| ||||| | |||||| ||||| |||||||| || | | ||||| | ||| || || || || |||||||| |||| |||||||||| ||| |
|
|
| T |
6641151 |
agcttgattgtgatatccggaaaaccaaagtcatggagacaagagttgaggaacttccaattaacattatcaaaagctttttccaggtcaagcttgaaag |
6641250 |
T |
|
| Q |
231 |
ctacgtaacccttcttccttttagagtgcttcatgaaatgaataatttcctgcaaaacaatagagttatctgcagtgcccctaccaggcagaaagctgct |
330 |
Q |
| |
|
|||| || ||||| || ||||| || ||||| ||||| | |||||||||||||| ||| |||||||| ||||||||||| ||| ||||| || || |
|
|
| T |
6641251 |
ctacatagcccttttttcttttggatcttttcataaaatggacaatttcctgcaaaataattgagttatcataagtgcccctacgaggtagaaaactact |
6641350 |
T |
|
| Q |
331 |
ttgatagggaccaata |
346 |
Q |
| |
|
||||||||| |||||| |
|
|
| T |
6641351 |
ttgataggggccaata |
6641366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 261 - 333
Target Start/End: Complemental strand, 23944900 - 23944828
Alignment:
| Q |
261 |
tcatgaaatgaataatttcctgcaaaacaatagagttatctgcagtgcccctaccaggcagaaagctgctttg |
333 |
Q |
| |
|
||||| ||||||||||||||||||||||||| || ||||| | ||| |||||||||||||||||||||||||| |
|
|
| T |
23944900 |
tcatgtaatgaataatttcctgcaaaacaatggaattatcagaagttcccctaccaggcagaaagctgctttg |
23944828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 38 - 99
Target Start/End: Original strand, 32874502 - 32874563
Alignment:
| Q |
38 |
ccttgtcggaggccatgagaaggcttgaaaggcggcgacttgttcccgttccaaagtataga |
99 |
Q |
| |
|
||||| |||||||||||||||||||||||||| ||| |||||||||| || ||||| ||||| |
|
|
| T |
32874502 |
ccttggcggaggccatgagaaggcttgaaaggaggcaacttgttcccatttcaaaggataga |
32874563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 262 - 346
Target Start/End: Original strand, 23620887 - 23620971
Alignment:
| Q |
262 |
catgaaatgaataatttcctgcaaaacaatagagttatctgcagtgcccctaccaggcagaaagctgctttgatagggaccaata |
346 |
Q |
| |
|
||||||||| | |||||||||||||||||||||||| || |||||| ||||| ||||||| | |||||| |||||||||||| |
|
|
| T |
23620887 |
catgaaatggacaatttcctgcaaaacaatagagttgtcaaaagtgcctctaccttgcagaaaaccgctttggtagggaccaata |
23620971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 104; Significance: 9e-52; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 4 - 346
Target Start/End: Original strand, 54477415 - 54477758
Alignment:
| Q |
4 |
gcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcgacttgttcccgttccaaagtatagagtaa |
103 |
Q |
| |
|
|||||| ||||| |||||||||||||| ||||||||||| || || ||||| | ||||||||||| || |||||| || |||||||| ||| |||| |
|
|
| T |
54477415 |
gcaaagaatgaagagataaggggacaaaggatcaccttggcgcagaccatgtgtaggcttgaaagatggaagcttgtttccattccaaaggataaagtat |
54477514 |
T |
|
| Q |
104 |
ctaggagaagctacgcaatgcatgatgagcttgatggtgatgttcggaaatccaaaatcatggaggcagttgcttaggaaatcccagttgacgttgtcga |
203 |
Q |
| |
|
| | || | || |||||||||||||||||||||||||||| || || | |||||||| ||||||||||| ||||| ||||| ||||| ||||| | |
|
|
| T |
54477515 |
tttgatgatgaaacacaatgcatgatgagcttgatggtgatgtcagggaactcgaaatcatgaaggcagttgctaaggaattcccaattgacattgtcaa |
54477614 |
T |
|
| Q |
204 |
aagctttctccaagtcaagcttgtaagctacgtaacccttcttccttttagagtgcttcatgaaatgaataatttcctgc-aaaacaatagagttatctg |
302 |
Q |
| |
|
||||||| | ||| |||||||| ||||||| ||||||||||| ||||| || | | ||||||||||| ||||||||| ||||||||||||||||||| |
|
|
| T |
54477615 |
aagcttttttcaaatcaagcttaaaagctacataacccttcttacttttggatctccttatgaaatgaattatttcctgcaaaaacaatagagttatctg |
54477714 |
T |
|
| Q |
303 |
cagtgcccctaccaggcagaaagctgctttgatagggaccaata |
346 |
Q |
| |
|
||||||||| ||||||||||| |||||||| |||| |||||| |
|
|
| T |
54477715 |
aagtgccccttccaggcagaaaactgctttggcaggggccaata |
54477758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 31 - 346
Target Start/End: Complemental strand, 3881830 - 3881512
Alignment:
| Q |
31 |
cggatcaccttgtcggaggccatgagaaggcttgaaaggcggcgacttgttcccgttccaaagtatagagtaactaggagaagct-acgcaatgcatgat |
129 |
Q |
| |
|
|||||||||||||||||||||||| | ||| |||||| ||||| ||||| || ||||| | |||||| | | |||| || | || ||||||||||| |
|
|
| T |
3881830 |
cggatcaccttgtcggaggccatgtgtaggtttgaaatgcggcattttgttaccattccataagatagagaaggt-ggaggaggtgacacaatgcatgat |
3881732 |
T |
|
| Q |
130 |
gagcttgatggtgatgttcggaaatccaaaatcatggaggcagttgcttaggaaatcccagttgacgttgtcgaaagctttctccaagtcaagcttgtaa |
229 |
Q |
| |
|
|| |||||||||||| |||||| |||| ||||| ||||| | || |||||||| ||||| || || || ||||| ||||| || |||||| || |
|
|
| T |
3881731 |
aagtttgatggtgatggccggaaaatcaaactcatgaaggcaagaattaagaaaatcccatttgacattatcaaatgctttttccaaatcgagcttgaaa |
3881632 |
T |
|
| Q |
230 |
gctacgtaacc---cttcttccttttagagtgcttcatgaaatgaataatttcctgcaaaacaatagagttatctgcagtgcccctaccaggcagaaagc |
326 |
Q |
| |
|
|| || ||||| ||||||| | ||||| | |||||| ||||||||||||||||||||||||||||||||||| | ||| ||||||||||||||||| | |
|
|
| T |
3881631 |
gcaacataacctttcttcttcttcttagacttcttcataaaatgaataatttcctgcaaaacaatagagttatcagaagttcccctaccaggcagaaaac |
3881532 |
T |
|
| Q |
327 |
tgctttgatagggaccaata |
346 |
Q |
| |
|
||||||| || || |||||| |
|
|
| T |
3881531 |
tgctttggtaagggccaata |
3881512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 261 - 333
Target Start/End: Complemental strand, 33803860 - 33803788
Alignment:
| Q |
261 |
tcatgaaatgaataatttcctgcaaaacaatagagttatctgcagtgcccctaccaggcagaaagctgctttg |
333 |
Q |
| |
|
||||| ||||||||||||||||||||||||| || ||||| | ||| |||||||||||||||||||||||||| |
|
|
| T |
33803860 |
tcatgtaatgaataatttcctgcaaaacaatggaattatcagaagttcccctaccaggcagaaagctgctttg |
33803788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 262 - 346
Target Start/End: Complemental strand, 48848055 - 48847971
Alignment:
| Q |
262 |
catgaaatgaataatttcctgcaaaacaatagagttatctgcagtgcccctaccaggcagaaagctgctttgatagggaccaata |
346 |
Q |
| |
|
|||||| ||| | ||||||||||||||||| | ||| || | |||||||||||||| |||||| |||||||||||| |||||||| |
|
|
| T |
48848055 |
catgaagtgagtgatttcctgcaaaacaattgtgttgtcagtagtgcccctaccagacagaaaactgctttgatagagaccaata |
48847971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 262 - 346
Target Start/End: Original strand, 46784742 - 46784826
Alignment:
| Q |
262 |
catgaaatgaataatttcctgcaaaacaatagagttatctgcagtgcccctaccaggcagaaagctgctttgatagggaccaata |
346 |
Q |
| |
|
|||||| |||| |||||||||||||||||||||||| || | |||||| |||| || ||||| || ||||| |||||||||||| |
|
|
| T |
46784742 |
catgaagtgaacaatttcctgcaaaacaatagagttgtcagaggtgcccttacctggtagaaaactactttggtagggaccaata |
46784826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036 (Bit Score: 96; Significance: 5e-47; HSPs: 1)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 4 - 346
Target Start/End: Complemental strand, 76046 - 75707
Alignment:
| Q |
4 |
gcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcgacttgttcccgttccaaagtatagagtaa |
103 |
Q |
| |
|
|||||||||||||||||||||||||||| | |||||||||| ||| ||||||| ||||||||| | ||| |||||||| ||||| | || ||||| |
|
|
| T |
76046 |
gcaaaggatgaaaagataaggggacaactggtcaccttgtctgagaccatgagtaggcttgaaggaaggcagcttgttcca-ttccataaaattgagtag |
75948 |
T |
|
| Q |
104 |
ctaggagaagctacgcaatgcatgatgagcttgatggtgatgttcggaaatccaaaatcatggaggcagttgcttaggaaatcccagttgacgttgtcga |
203 |
Q |
| |
|
|||| |||| | ||||||| ||||||||||| ||||||| | || || ||||||||||||||| |||| || |||||| ||||||||||||| | |
|
|
| T |
75947 |
ctagatgaagaaatacaatgcaaaatgagcttgatagtgatgtctaggaagccgaaatcatggaggcagatgctaagaaaatccaagttgacgttgtcaa |
75848 |
T |
|
| Q |
204 |
aagctttctccaagtcaagcttgtaagctacgtaacccttcttccttttagagtgcttcatgaaatgaataatttcctgcaaaacaatagagttatctgc |
303 |
Q |
| |
|
||| |||| || ||||| ||| ||||||| | ||||||||||||| || |||||||||| ||||| |||||||||||||||||| ||||||||| |
|
|
| T |
75847 |
aagatttc--catatcaagtttgaaagctacaaagtccttcttccttttggaacgcttcatgaagtgaattatttcctgcaaaacaataaagttatctga |
75750 |
T |
|
| Q |
304 |
agtgcccctaccaggcagaaagctgctttgatagggaccaata |
346 |
Q |
| |
|
||||||||||||||||| | | || ||||||||||| |||||| |
|
|
| T |
75749 |
agtgcccctaccaggcaaacaactactttgataggggccaata |
75707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 92; Significance: 1e-44; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 119 - 346
Target Start/End: Original strand, 11296925 - 11297152
Alignment:
| Q |
119 |
caatgcatgatgagcttgatggtgatgttcggaaatccaaaatcatggaggcagttgcttaggaaatcccagttgacgttgtcgaaagctttctccaagt |
218 |
Q |
| |
|
||||||||||||||| | |||||||||| || || ||||||||||||||| | || || |||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
11296925 |
caatgcatgatgagcataatggtgatgtcggggaaaccaaaatcatggaggaaagaactaagaaaatcccaattgacgttgtcaaaagctttctccaagt |
11297024 |
T |
|
| Q |
219 |
caagcttgtaagctacgtaacccttcttccttttagagtgcttcatgaaatgaataatttcctgcaaaacaatagagttatctgcagtgcccctaccagg |
318 |
Q |
| |
|
|||||||| |||| || |||||||||||||||||||| ||||||| || || ||||| ||||||||||| |||||||| | ||| || |||||||| |
|
|
| T |
11297025 |
caagcttgaaagcgacataacccttcttccttttagatcttatcatgaagtggatgatttcgtgcaaaacaattgagttatcagaagtaccactaccagg |
11297124 |
T |
|
| Q |
319 |
cagaaagctgctttgatagggaccaata |
346 |
Q |
| |
|
|||||| ||||||||||||| ||||||| |
|
|
| T |
11297125 |
cagaaaactgctttgataggaaccaata |
11297152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 119 - 333
Target Start/End: Original strand, 24893962 - 24894176
Alignment:
| Q |
119 |
caatgcatgatgagcttgatggtgatgttcggaaatccaaaatcatggaggcagttgcttaggaaatcccagttgacgttgtcgaaagctttctccaagt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| ||||| || || ||||| | ||||||||||| |||| || ||||||||||||||||||| |
|
|
| T |
24893962 |
caatgcatgatgagcttgatggtgatgtctggaaaaccaaattcctgaaggcaagaattaaggaaatcccatctgacattatcgaaagctttctccaagt |
24894061 |
T |
|
| Q |
219 |
caagcttgtaagctacgtaacccttcttccttttagagtgcttcatgaaatgaataatttcctgcaaaacaatagagttatctgcagtgcccctaccagg |
318 |
Q |
| |
|
| |||||| |||| || ||||| |||||||| || || | | ||||||| ||||||||||||||||||||||| |||||||| | ||| ||||||||||| |
|
|
| T |
24894062 |
ctagcttgaaagcaacataacctttcttcctctttgatttcctcatgaagtgaataatttcctgcaaaacaattgagttatcagaagttcccctaccagg |
24894161 |
T |
|
| Q |
319 |
cagaaagctgctttg |
333 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
24894162 |
cagaaagctgctttg |
24894176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 133 - 346
Target Start/End: Complemental strand, 35233499 - 35233286
Alignment:
| Q |
133 |
cttgatggtgatgttcggaaatccaaaatcatggaggcagttgcttaggaaatcccagttgacgttgtcgaaagctttctccaagtcaagcttgtaagct |
232 |
Q |
| |
|
||||||||||||||| || || || || ||||| ||||| || || || || ||||||||||| ||||| ||||||||||| | ||||| ||| ||||| |
|
|
| T |
35233499 |
cttgatggtgatgttagggaaaccgaagtcatgaaggcaattactaagaaactcccagttgacattgtcaaaagctttctctagatcaagtttgaaagct |
35233400 |
T |
|
| Q |
233 |
acgtaacccttcttccttttagagtgcttcatgaaatgaataatttcctgcaaaacaatagagttatctgcagtgcccctaccaggcagaaagctgcttt |
332 |
Q |
| |
|
|| || || |||||| |||| || | ||||||| |||| |||||||| ||||||||| ||||| || | ||||||||||||| |||||| ||||||| |
|
|
| T |
35233399 |
acataccctttcttctttttggattttctcatgaagtgaacaatttccttcaaaacaattgagttgtcagaggtgcccctaccagacagaaaactgcttt |
35233300 |
T |
|
| Q |
333 |
gatagggaccaata |
346 |
Q |
| |
|
||||||| |||||| |
|
|
| T |
35233299 |
gataggggccaata |
35233286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 119 - 346
Target Start/End: Original strand, 32725587 - 32725814
Alignment:
| Q |
119 |
caatgcatgatgagcttgatggtgatgttcggaaatccaaaatcatggaggcagttgcttaggaaatcccagttgacgttgtcgaaagctttctccaagt |
218 |
Q |
| |
|
||||||||||| |||||||||||||||| |||||||||||| ||| ||||||| | || |||||||| |||| || || ||||||||||||| || |
|
|
| T |
32725587 |
caatgcatgataagcttgatggtgatgtccggaaatccaaactcaaggaggcaagaattaagaaaatcccatctgacattatcaaaagctttctccaggt |
32725686 |
T |
|
| Q |
219 |
caagcttgtaagctacgtaacccttcttccttttagagtgcttcatgaaatgaataatttcctgcaaaacaatagagttatctgcagtgcccctaccagg |
318 |
Q |
| |
|
|||| ||| ||||||| || ||||||||| ||||||| |||| || |||| ||||||| ||||||||| ||||| || ||| |||||| ||| |
|
|
| T |
32725687 |
caagtttgaaagctacatatcccttcttctttttagatcttctcataaagtgaactatttcctacaaaacaattgagttgtcataagttcccctattagg |
32725786 |
T |
|
| Q |
319 |
cagaaagctgctttgatagggaccaata |
346 |
Q |
| |
|
|||||| |||||||| || || |||||| |
|
|
| T |
32725787 |
cagaaaactgctttggtaagggccaata |
32725814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 74; Significance: 7e-34; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 116 - 333
Target Start/End: Original strand, 23207989 - 23208206
Alignment:
| Q |
116 |
acgcaatgcatgatgagcttgatggtgatgttcggaaatccaaaatcatggaggcagttgcttaggaaatcccagttgacgttgtcgaaagctttctcca |
215 |
Q |
| |
|
||||||||||||||||| |||||||| || | ||||| |||||||| |||||||| | ||||||||||| |||| || |||||||||||||||| |
|
|
| T |
23207989 |
acgcaatgcatgatgagtttgatggtaatatctggaaaaccaaaatcctggaggcaagaattaaggaaatcccatctgacattatcgaaagctttctcca |
23208088 |
T |
|
| Q |
216 |
agtcaagcttgtaagctacgtaacccttcttccttttagagtgcttcatgaaatgaataatttcctgcaaaacaatagagttatctgcagtgcccctacc |
315 |
Q |
| |
|
|||| |||||| |||| || ||||| |||||||| || || | | |||| || ||||||||||||||||||||||| ||||| || | ||| |||||||| |
|
|
| T |
23208089 |
agtctagcttgaaagcaacataacctttcttcctctttgacttcctcataaagtgaataatttcctgcaaaacaattgagttgtcagaagttcccctacc |
23208188 |
T |
|
| Q |
316 |
aggcagaaagctgctttg |
333 |
Q |
| |
|
|||||||| |||||||| |
|
|
| T |
23208189 |
tggcagaaaactgctttg |
23208206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 10 - 346
Target Start/End: Original strand, 16769979 - 16770314
Alignment:
| Q |
10 |
gatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcgacttgttcccgttccaaagtatagagtaactagga |
109 |
Q |
| |
|
|||||| |||||||| || | |||||||||||||| || ||||||| ||| |||||| ||||| | ||||| || ||||| | |||||| || | | | |
|
|
| T |
16769979 |
gatgaagagataaggtgaaagaggatcaccttgtcgaagaccatgagtaggtttgaaatgcggcaatttgttaccattccataaaatagagaaagtggaa |
16770078 |
T |
|
| Q |
110 |
gaagctacgcaatgcatgatgagcttgatggtgatgttcggaaatccaaaatcatggaggcagttgcttaggaaatcccagttgacgttgtcgaaagctt |
209 |
Q |
| |
|
|||| || || ||||| || || |||||||| |||| || |||||||||||||| || || || || ||||| |||||||| || || ||||||| |
|
|
| T |
16770079 |
gaagaaacacagtgcataataagtttgatggtaatgtctgggaatccaaaatcatgcagacaattatgaagaaaatctcagttgacattatcaaaagctt |
16770178 |
T |
|
| Q |
210 |
tctccaagtcaagcttgtaagctacgtaacccttcttccttttagagtgcttcatgaaatgaataatttcctgcaaaacaatagagttatctgcagtgcc |
309 |
Q |
| |
|
| || | ||||||||| |||| || ||||| ||||| |||| | ||| |||||||| |||||||||||||||||| ||||| || | |||||| |
|
|
| T |
16770179 |
tttcaaggtcaagcttaaaagccacataacc-ttcttttttttttatcttctcaagaaatgaaaaatttcctgcaaaacaattgagttgtcagtagtgcc |
16770277 |
T |
|
| Q |
310 |
cctaccaggcagaaagctgctttgatagggaccaata |
346 |
Q |
| |
|
||||||||||||||| ||||| ||||| ||||||||| |
|
|
| T |
16770278 |
cctaccaggcagaaaactgctctgataaggaccaata |
16770314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 122 - 342
Target Start/End: Original strand, 27781759 - 27781979
Alignment:
| Q |
122 |
tgcatgatgagcttgatggtgatgttcggaaatccaaaatcatggaggcagttgcttaggaaatcccagttgacgttgtcgaaagctttctccaagtcaa |
221 |
Q |
| |
|
|||||||||||||| ||||| || | || || ||||| ||||| ||||| |||| ||||||||| ||||| || || ||||||||||| | ||||| |
|
|
| T |
27781759 |
tgcatgatgagctttatggtaatatctgggaaaccaaagtcatgaaggcaagcacttaagaaatcccaattgacattatcaaaagctttctctaggtcaa |
27781858 |
T |
|
| Q |
222 |
gcttgtaagctacgtaacccttcttccttttagagtgcttcatgaaatgaataatttcctgcaaaacaatagagttatctgcagtgcccctaccaggcag |
321 |
Q |
| |
|
| ||| ||||||| |||| |||||| | ||||| | ||| || || | |||||||| ||||||||||||||| || || ||||||||||| ||||| |
|
|
| T |
27781859 |
gtttgaaagctacacaacctttcttcttcttagatctccgcataaagtgtacaatttcctacaaaacaatagagttgtcagccgtgcccctacctggcag |
27781958 |
T |
|
| Q |
322 |
aaagctgctttgatagggacc |
342 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
27781959 |
gaagctgctttgatagggacc |
27781979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 262 - 346
Target Start/End: Original strand, 1579428 - 1579512
Alignment:
| Q |
262 |
catgaaatgaataatttcctgcaaaacaatagagttatctgcagtgcccctaccaggcagaaagctgctttgatagggaccaata |
346 |
Q |
| |
|
|||||| ||| | ||||||| ||||||||| ||||| || | || |||||||| ||||||||| ||||||||||||||||||||| |
|
|
| T |
1579428 |
catgaagtgagttatttccttcaaaacaattgagttgtcagtagcgcccctactaggcagaaaactgctttgatagggaccaata |
1579512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0214 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0214
Description:
Target: scaffold0214; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 269 - 346
Target Start/End: Complemental strand, 8841 - 8764
Alignment:
| Q |
269 |
tgaataatttcctgcaaaacaatagagttatctgcagtgcccctaccaggcagaaagctgctttgatagggaccaata |
346 |
Q |
| |
|
||||||||||||||||||||||| | || || | ||||||||||||||||| || |||||||| || ||||||||| |
|
|
| T |
8841 |
tgaataatttcctgcaaaacaatggcattgtcagtggtgcccctaccaggcaggaaactgctttggtaaggaccaata |
8764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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