View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0559_low_17 (Length: 345)
Name: NF0559_low_17
Description: NF0559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0559_low_17 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 29 - 345
Target Start/End: Original strand, 31638699 - 31639015
Alignment:
| Q |
29 |
atatcattgggatcttccacagatgctggaagataaatatgaaggatggttaagtacacaaataatgtaagttacttcaatgctatatacttatatagca |
128 |
Q |
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| T |
31638699 |
atatcattgggatcttccacagatgctggaagataaatatgaaggatggttaagtacacaaataatgtaagttacttcaatgctatatacttatatagca |
31638798 |
T |
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| Q |
129 |
tgcatagtatcaacatttctgattgaatgcgtatctaggtatcggacacatcaacacgacaccgacatatgcgattatattcaaattaattcattttctc |
228 |
Q |
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| T |
31638799 |
tgcataatatcaacatttctgattgaatgcgtatctaggtatcggacacatcaacacgacaccgacatatgcgattatattcaaattaattcattttctc |
31638898 |
T |
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| Q |
229 |
aagttattatcggttttctcatgtcaatgtcgtgtttgatgtccatgtttctgtgtcagtggtttatagccgaggtcttttgagaaaaattgttttctga |
328 |
Q |
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| T |
31638899 |
aagttattatcggttttctcatgtcaatgtcgtgtttgatgtccatgtttctgtgtcagtggtttatagccgaggtcttttgagaaaaattgttttctga |
31638998 |
T |
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| Q |
329 |
gcttcatatttctctct |
345 |
Q |
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| T |
31638999 |
gcttcatatttatctct |
31639015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 239
Target Start/End: Original strand, 46179910 - 46179963
Alignment:
| Q |
185 |
cgacaccgacatatgcgattatattcaaattaattcattttctcaagttattatc |
239 |
Q |
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| T |
46179910 |
cgacaccgacacatgtgattatattc-aattaatttattttctcaacttattatc |
46179963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 242
Target Start/End: Complemental strand, 34625785 - 34625737
Alignment:
| Q |
193 |
acatatgcgattatattcaaattaattcattttctcaagttattatcggt |
242 |
Q |
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| T |
34625785 |
acatatgtgattacattcaa-ttaattcattttctcaaattattatcggt |
34625737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 196 - 244
Target Start/End: Original strand, 41226745 - 41226792
Alignment:
| Q |
196 |
tatgcgattatattcaaattaattcattttctcaagttattatcggttt |
244 |
Q |
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| T |
41226745 |
tatgtgattatattcaaat-agttcattttctcaaattattatcggttt |
41226792 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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