View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0559_low_18 (Length: 332)
Name: NF0559_low_18
Description: NF0559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0559_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 310; Significance: 1e-175; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 310; E-Value: 1e-175
Query Start/End: Original strand, 1 - 322
Target Start/End: Original strand, 43319548 - 43319869
Alignment:
| Q |
1 |
tgcctcttgtttagcctatcattttattcattttgagaaatgaacttggtcgtaagagttgaaaagtattgttccaaaccttacctatgttgtttactct |
100 |
Q |
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| T |
43319548 |
tgcctcttgtttagcctatcattttattcattttgagaaatgaacttggtcgtaagagttgaaaagtattgttccaaaccttacctatgttgtttactct |
43319647 |
T |
|
| Q |
101 |
ttcaagtttgggagttaagggaaaaatgatatgaagtgtccaatatccatcaaaacaagtagcattgatgtcatctatatctcatttctcatcatgcctg |
200 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43319648 |
ttcaagtttgggagttgagggaaaaatgatatgaagtgtccaatatccatcaaaacaagtagcattgatgtcatctatatctcatttctcatcatgcctg |
43319747 |
T |
|
| Q |
201 |
atatacacgcttcataaatattaacataagaatgcctttgttttcttgcttgtaattgatggcataatcactttgggatatgaaatggacttattgtttc |
300 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
43319748 |
atatacacgcttcataaatattaacataagaatgcatttgttttcttgcttgtaattgatggcataatcactttgggatgtgaaatggacttattgtttc |
43319847 |
T |
|
| Q |
301 |
tacttttatgacaggttctctg |
322 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
43319848 |
tacttttatgacaggttctctg |
43319869 |
T |
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