View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0559_low_19 (Length: 326)
Name: NF0559_low_19
Description: NF0559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0559_low_19 |
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| [»] scaffold0190 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 274; Significance: 1e-153; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 29 - 318
Target Start/End: Original strand, 39082369 - 39082658
Alignment:
| Q |
29 |
aaatcattaccataaacatcaaacctctgagaaccactcgtcgccaatgaattgctacctgccaaattaccaatttcaaataacttcggcattctcaacc |
128 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
39082369 |
aaatcattaccataaacatcaaacctctgagaactactcgtcgccaatgaattgctacctgccaaattaccaacttcaaataacttcggcattctcaacc |
39082468 |
T |
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| Q |
129 |
aatactcataatcatcccttattttctcatcagaatgcaacataatcatcttgttcatctccaaagcaacttttccaatcccacattccagaatctcccc |
228 |
Q |
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|| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39082469 |
aacactcataatcatcccttattttctcatcagaacgcaacataatcatcttgttcatctccaaagcaacttttccaatcccacattccagaatctcccc |
39082568 |
T |
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| Q |
229 |
cactttcattgttaccccaccaaagatcgctgcatttccaaaataaccctcgtcaagtggaggaatcatccttggtctaacacctatgct |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39082569 |
cactttcattgttaccccaccaaagatcgctgcatttccaaaataaccctcgtcaagtggaggaatcatccttggtctaacacctatgct |
39082658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 29 - 315
Target Start/End: Original strand, 39088023 - 39088309
Alignment:
| Q |
29 |
aaatcattaccataaacatcaaacctctgagaaccactcgtcgccaatgaattgctacctgccaaattaccaatttcaaataacttcggcattctcaacc |
128 |
Q |
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||||||||| |||||||||||||||| |||||| |||||| ||||||||||| |||||||||| || ||| |||| ||||| |||||| |||||| |
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| T |
39088023 |
aaatcattatcataaacatcaaaccttggagaactactcgtagccaatgaattagcacctgccaaactattaatcccaaacaactttggcattttcaacc |
39088122 |
T |
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| Q |
129 |
aatactcataatcatcccttattttctcatcagaatgcaacataatcatcttgttcatctccaaagcaacttttccaatcccacattccagaatctcccc |
228 |
Q |
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|| |||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| | | |||||| ||||||||||||||||||||||| |
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| T |
39088123 |
aacactcataatcatcccttattttctcatcagaacgtaacataatcatcttgttcatctccaatgaacattttcctatcccacattccagaatctcccc |
39088222 |
T |
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| Q |
229 |
cactttcattgttaccccaccaaagatcgctgcatttccaaaataaccctcgtcaagtggaggaatcatccttggtctaacacctat |
315 |
Q |
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| T |
39088223 |
tgctttcattgttacactaccaatgatccctgcatttccaaaataatcctcgtcaagtggaggagtcatccttggtctaacacctat |
39088309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 29 - 315
Target Start/End: Original strand, 39091414 - 39091700
Alignment:
| Q |
29 |
aaatcattaccataaacatcaaacctctgagaaccactcgtcgccaatgaattgctacctgccaaattaccaatttcaaataacttcggcattctcaacc |
128 |
Q |
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||||||||||| ||||||||||||||| |||||| ||| || |||| | ||| | ||| | |||| | |||| |||| | ||||||||||||||||| |
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| T |
39091414 |
aaatcattaccgtaaacatcaaacctcggagaactacttgttcccaacgtattaccacccgtcaaaacatcaatcccaaaaatcttcggcattctcaacc |
39091513 |
T |
|
| Q |
129 |
aatactcataatcatcccttattttctcatcagaatgcaacataatcatcttgttcatctccaaagcaacttttccaatcccacattccagaatctcccc |
228 |
Q |
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|| ||||||| | |||||||||||||||||||||||| |||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |
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| T |
39091514 |
aacactcatagtaatcccttattttctcatcagaatgtgacataatcatcttgtttaactccaaagcaacttttccaatcccacattccagaatctcccc |
39091613 |
T |
|
| Q |
229 |
cactttcattgttaccccaccaaagatcgctgcatttccaaaataaccctcgtcaagtggaggaatcatccttggtctaacacctat |
315 |
Q |
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| T |
39091614 |
tgctttcattgttacaccaccaatcattgaagcatttccaaaataatcctcctcaagcggaggaatcatccttggtctaacacctat |
39091700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 120 - 237
Target Start/End: Original strand, 39071056 - 39071173
Alignment:
| Q |
120 |
ttctcaaccaatactcataatcatcccttattttctcatcagaatgcaacataatcatcttgttcatctccaaagcaacttttccaatcccacattccag |
219 |
Q |
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||||||||||| |||| |||| | ||||||||||||||||||||| |||| |||||||||||| |||||||||||||||||||| || |||| || || |
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| T |
39071056 |
ttctcaaccaagactcgtaatggttccttattttctcatcagaatgtaacaaaatcatcttgtttatctccaaagcaacttttccgatttcacactctag |
39071155 |
T |
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| Q |
220 |
aatctcccccactttcat |
237 |
Q |
| |
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|| |||||| |||||||| |
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| T |
39071156 |
aacctccccgactttcat |
39071173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0190 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0190
Description:
Target: scaffold0190; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 194
Target Start/End: Original strand, 4589 - 4630
Alignment:
| Q |
153 |
tctcatcagaatgcaacataatcatcttgttcatctccaaag |
194 |
Q |
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| T |
4589 |
tctcatcagagtgcaaaacaatcatcttgttcatctccaaag |
4630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 206
Target Start/End: Complemental strand, 15744933 - 15744880
Alignment:
| Q |
153 |
tctcatcagaatgcaacataatcatcttgttcatctccaaagcaacttttccaa |
206 |
Q |
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|||||||||| ||||| ||||||||||||||||||||||||| |||| |||| |
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| T |
15744933 |
tctcatcagattgcaaagcaatcatcttgttcatctccaaagcacctttaccaa |
15744880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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