View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0559_low_2 (Length: 675)
Name: NF0559_low_2
Description: NF0559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0559_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 188; Significance: 1e-101; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 59 - 295
Target Start/End: Original strand, 24169439 - 24169677
Alignment:
| Q |
59 |
tgggtataaaggatctcaagaagttcatgtctcaaaaatttgatgctcgagacgtgcaatttaaggaaatcaacgaaaggtttgatgctcaagatctaaa |
158 |
Q |
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| T |
24169439 |
tgggtataaaggatcttaagaagttcacgtctcaaaaatttgatgctcaagacatgcaattcaaggaaatcaacgaaaggtttgatgctcaagatctaaa |
24169538 |
T |
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| Q |
159 |
gtttaaggaagtcaatgaaagactagacactcaaaatgcttccattcaagatat--gtgagtcaattcaaaagtggaatgatcttggggtgaacgccgat |
256 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| ||||| |
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| T |
24169539 |
gtttaaggaagtcaatgaaagactagactctcaaaatgcttccattcaagatatgcgggagtcaattcaaaagtggaatgatcttggggtgaaccccgat |
24169638 |
T |
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| Q |
257 |
atcttttatgcctcatcttgtcctaaaaataccacaccg |
295 |
Q |
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| T |
24169639 |
atcttttatgccttaccttgtcctaaaaataccacaccg |
24169677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 120; Significance: 5e-61; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 48 - 276
Target Start/End: Complemental strand, 11583967 - 11583737
Alignment:
| Q |
48 |
tgaagtcttggtgggtataaaggatctcaagaagttcatgtctcaaaaatttgatgctcgagacgtgcaatttaaggaaatcaacgaaaggtttgatgct |
147 |
Q |
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| T |
11583967 |
tgaagtcttgttagggataaaggatctaaagaagtacatgtctcaaaagtttgatgctcaagacatgcagttcaaggaaatcaacaaaaggtttgatgcg |
11583868 |
T |
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| Q |
148 |
caagatctaaagtttaaggaagtcaatgaaagactagacactcaaaatgcttccattcaagatat--gtgagtcaattcaaaagtggaatgatcttgggg |
245 |
Q |
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| T |
11583867 |
caagatttaaagtttaaagaagtccatgaaagaatagattctcaaaatgcatccattcaagatatgcgggagtccattcaaaagtggaatgatcttgggg |
11583768 |
T |
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| Q |
246 |
tgaacgccgatatcttttatgcctcatcttg |
276 |
Q |
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| T |
11583767 |
tgaacaccgataccttttttgcctcaccttg |
11583737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 76 - 240
Target Start/End: Original strand, 21216554 - 21216720
Alignment:
| Q |
76 |
aagaagttcatgtctcaaaaatttgatgctcgagacgtgcaatttaaggaaatcaacgaaaggtttgatgctcaagatctaaagtttaaggaagtcaatg |
175 |
Q |
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||||||| |||||||||||| |||||||||| |||| | || || || || |||||| |||||||||||||||| || |||||||||| || ||||| |
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| T |
21216554 |
aagaagtacatgtctcaaaagtttgatgctcaagacttacagttcaaagatatcaacaaaaggtttgatgctcaggacttaaagtttaatgatatcaata |
21216653 |
T |
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| Q |
176 |
aaagactagacactcaaaatgcttccattcaagatatgtga--gtcaattcaaaagtggaatgatct |
240 |
Q |
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| ||||||| ||||||||| |||||||||| | |||||| ||| |||||||||||||| ||||| |
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| T |
21216654 |
catgactagattctcaaaatgtttccattcaaaaaatgtgagggtctattcaaaagtggaacgatct |
21216720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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