View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0559_low_23 (Length: 323)
Name: NF0559_low_23
Description: NF0559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0559_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 14406038 - 14405764
Alignment:
| Q |
1 |
cctttggtgtgtcgacaaagtgacaaacattaccttaaaactcacacactacatttctttgaattgaatagatatagataagatacattagcacataaat |
100 |
Q |
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||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14406038 |
cctttagtgtgtagacaaagtgacaaacattaccttaaaactcacacactacatttctttgaattgaatagatatagataagatacattagcacataaat |
14405939 |
T |
|
| Q |
101 |
aaccacaatgttttaaagtaccttcatcaagcactacaccaacattcaattcttgaaaaacctttgaaagagaaaacttctccgcaccatcatgtccacc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14405938 |
aaccacaatgttttaaagtaccttcatcaagcactacaccaacattcaattcttgaaaaacctttgaaagagaaaacttctccgcaccatcatgtccacc |
14405839 |
T |
|
| Q |
201 |
aacctcctcatcaggagcaaaaaccaaataaacattcctcttaggctgaaaaccccatcctttaagattcctaac |
275 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |
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| T |
14405838 |
aacctcctcatcaggagcaaaaaccaaataaacagtcctcttaggctgaaaatcccatcctttaagattcctaac |
14405764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 119 - 275
Target Start/End: Complemental strand, 14435510 - 14435354
Alignment:
| Q |
119 |
taccttcatcaagcactacaccaacattcaattcttgaaaaacctttgaaagagaaaacttctccgcaccatcatgtccaccaacctcctcatcaggagc |
218 |
Q |
| |
|
|||||||||||||||||| |||||||||||| || |||||| |||| ||||| |||||||| || ||||||||||| ||||||| ||||||||||||||| |
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| T |
14435510 |
taccttcatcaagcactataccaacattcaagtcctgaaaatccttcgaaagcgaaaacttttcagcaccatcatgaccaccaatctcctcatcaggagc |
14435411 |
T |
|
| Q |
219 |
aaaaaccaaataaacattcctcttaggctgaaaaccccatcctttaagattcctaac |
275 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| |||| | ||||||| ||||||| |
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|
| T |
14435410 |
aaaaaccaaataaacagtcctcttaggctgaaaatcccaacttttaagaatcctaac |
14435354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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