View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0559_low_27 (Length: 302)

Name: NF0559_low_27
Description: NF0559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0559_low_27
NF0559_low_27
[»] chr3 (9 HSPs)
chr3 (79-193)||(38485651-38485765)
chr3 (119-189)||(22814607-22814677)
chr3 (127-189)||(45728343-45728405)
chr3 (118-174)||(43933433-43933489)
chr3 (127-189)||(25770742-25770804)
chr3 (120-174)||(37172076-37172130)
chr3 (120-189)||(9218539-9218608)
chr3 (114-174)||(25770310-25770370)
chr3 (114-174)||(44504427-44504487)
[»] chr4 (7 HSPs)
chr4 (129-189)||(56106487-56106547)
chr4 (119-174)||(30608674-30608729)
chr4 (127-174)||(19310789-19310836)
chr4 (127-189)||(7118190-7118252)
chr4 (120-174)||(51906415-51906469)
chr4 (127-172)||(3296545-3296590)
chr4 (137-189)||(5544796-5544848)
[»] chr7 (8 HSPs)
chr7 (114-189)||(10466805-10466880)
chr7 (125-189)||(30938595-30938659)
chr7 (127-174)||(32092230-32092277)
chr7 (127-174)||(17075658-17075705)
chr7 (123-174)||(20544351-20544402)
chr7 (121-174)||(17075215-17075268)
chr7 (127-155)||(11974666-11974694)
chr7 (117-157)||(12933119-12933159)
[»] chr8 (9 HSPs)
chr8 (131-193)||(7344878-7344940)
chr8 (121-189)||(26997895-26997963)
chr8 (127-174)||(13315204-13315251)
chr8 (127-189)||(6297464-6297526)
chr8 (127-189)||(9800041-9800103)
chr8 (128-189)||(16662497-16662558)
chr8 (127-172)||(17915549-17915594)
chr8 (122-174)||(10047476-10047528)
chr8 (121-189)||(17914193-17914261)
[»] chr6 (5 HSPs)
chr6 (120-174)||(4510183-4510237)
chr6 (127-174)||(211762-211809)
chr6 (127-174)||(211443-211490)
chr6 (127-174)||(7646023-7646070)
chr6 (127-174)||(17157874-17157921)
[»] chr1 (8 HSPs)
chr1 (123-189)||(19976162-19976228)
chr1 (127-189)||(31436409-31436471)
chr1 (127-189)||(3591363-3591425)
chr1 (124-189)||(6751046-6751111)
chr1 (129-184)||(19976465-19976520)
chr1 (127-189)||(9880816-9880878)
chr1 (127-189)||(19895402-19895464)
chr1 (127-157)||(32596373-32596403)
[»] scaffold0009 (1 HSPs)
scaffold0009 (119-171)||(108166-108218)
[»] chr2 (8 HSPs)
chr2 (122-174)||(21217362-21217414)
chr2 (127-174)||(2191219-2191266)
chr2 (127-174)||(21182309-21182356)
chr2 (127-174)||(21216925-21216972)
chr2 (127-174)||(21264993-21265040)
chr2 (127-174)||(21265430-21265477)
chr2 (122-189)||(24093582-24093649)
chr2 (120-174)||(2517408-2517462)
[»] chr5 (3 HSPs)
chr5 (127-189)||(8750386-8750448)
chr5 (127-189)||(16284276-16284338)
chr5 (127-155)||(8648125-8648153)


Alignment Details
Target: chr3 (Bit Score: 99; Significance: 7e-49; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 79 - 193
Target Start/End: Original strand, 38485651 - 38485765
Alignment:
Q  79 tcacttggtccattagatgtgtatttgtagaagaaattttatttaggattaaatatgattttagtccttacattttgtgcctatttgaagaatagttcat 178  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| |||    
T  38485651 tcacttggtccattagatgtgtatttgtagaagaaattttatttagtattaaatatgattttagtccttacattttgtgcctctttgaagaatagtccat 38485750  T
Q  179 atattttattatatg 193  Q
    | |||||||||||||    
T  38485751 acattttattatatg 38485765  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 119 - 189
Target Start/End: Complemental strand, 22814677 - 22814607
Alignment:
Q  119 atttaggattaaatatgattttagtccttacattttgtgcctatttgaagaatagttcatatattttatta 189  Q
    ||||||| ||||||||| ||||||| |||| ||||||||||| |||||| ||||||||||| |||| ||||    
T  22814677 atttagggttaaatatgtttttagtacttatattttgtgcctctttgaaaaatagttcatacatttcatta 22814607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 127 - 189
Target Start/End: Complemental strand, 45728405 - 45728343
Alignment:
Q  127 ttaaatatgattttagtccttacattttgtgcctatttgaagaatagttcatatattttatta 189  Q
    ||||||||| ||||||||||||||||||||| |  ||||||||||||| |||| |||| ||||    
T  45728405 ttaaatatgtttttagtccttacattttgtgtccctttgaagaatagtccatacatttcatta 45728343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 118 - 174
Target Start/End: Original strand, 43933433 - 43933489
Alignment:
Q  118 tatttaggattaaatatgattttagtccttacattttgtgcctatttgaagaatagt 174  Q
    |||| ||| ||||||||  |||||||||||||||||||||||  |||||||||||||    
T  43933433 tattaagggttaaatatatttttagtccttacattttgtgcccgtttgaagaatagt 43933489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 127 - 189
Target Start/End: Complemental strand, 25770804 - 25770742
Alignment:
Q  127 ttaaatatgattttagtccttacattttgtgcctatttgaagaatagttcatatattttatta 189  Q
    ||||||||| ||||| |||||||||||||  |  |||||||||||||||| || |||||||||    
T  25770804 ttaaatatgtttttaatccttacattttgcactcatttgaagaatagttcctacattttatta 25770742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 120 - 174
Target Start/End: Original strand, 37172076 - 37172130
Alignment:
Q  120 tttaggattaaatatgattttagtccttacattttgtgcctatttgaagaatagt 174  Q
    ||||||| |||||||  ||||||||||||||||||| || ||||| |||||||||    
T  37172076 tttaggaataaatatttttttagtccttacattttgcgcttatttaaagaatagt 37172130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 189
Target Start/End: Complemental strand, 9218608 - 9218539
Alignment:
Q  120 tttaggattaaatatgattttagtccttacattttgtgcctatttgaagaatagttcatatattttatta 189  Q
    |||||| ||||||||| |||||||| |||||||||| ||   ||||||||||||| | ||||||| ||||    
T  9218608 tttagggttaaatatgtttttagtcattacattttgcgctcctttgaagaatagtccctatatttcatta 9218539  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 114 - 174
Target Start/End: Original strand, 25770310 - 25770370
Alignment:
Q  114 attttatttaggattaaatatgattttagtccttacattttgtgcctatttgaagaatagt 174  Q
    |||| ||||||| || |||||| ||||||||||||||||||||  |  |||||||||||||    
T  25770310 atttaatttagggttcaatatgtttttagtccttacattttgtatccctttgaagaatagt 25770370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 114 - 174
Target Start/End: Complemental strand, 44504487 - 44504427
Alignment:
Q  114 attttatttaggattaaatatgattttagtccttacattttgtgcctatttgaagaatagt 174  Q
    ||||| |||||| |||||| || |||||||||||||||||||  ||  |||||||||||||    
T  44504487 attttttttagggttaaatgtgtttttagtccttacattttgcacccctttgaagaatagt 44504427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 129 - 189
Target Start/End: Complemental strand, 56106547 - 56106487
Alignment:
Q  129 aaatatgattttagtccttacattttgtgcctatttgaagaatagttcatatattttatta 189  Q
    ||||||| |||||||| ||||||||||||||  ||||||||||||||| ||||||||||||    
T  56106547 aaatatgtttttagtctttacattttgtgcccctttgaagaatagttcctatattttatta 56106487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 119 - 174
Target Start/End: Complemental strand, 30608729 - 30608674
Alignment:
Q  119 atttaggattaaatatgattttagtccttacattttgtgcctatttgaagaatagt 174  Q
    ||||||| ||||||||| |||||| ||||||||||||||||| |||||||||||||    
T  30608729 atttagggttaaatatgtttttagaccttacattttgtgcctctttgaagaatagt 30608674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 127 - 174
Target Start/End: Original strand, 19310789 - 19310836
Alignment:
Q  127 ttaaatatgattttagtccttacattttgtgcctatttgaagaatagt 174  Q
    ||||||||| ||||||||||||||||||| |||| |||||||||||||    
T  19310789 ttaaatatgtttttagtccttacattttgcgcctctttgaagaatagt 19310836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 127 - 189
Target Start/End: Complemental strand, 7118252 - 7118190
Alignment:
Q  127 ttaaatatgattttagtccttacattttgtgcctatttgaagaatagttcatatattttatta 189  Q
    ||||||||| ||||||||||||||||||| |||  ||||||||||||| |||| |||| ||||    
T  7118252 ttaaatatgtttttagtccttacattttgcgcccctttgaagaatagtccatacatttcatta 7118190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 120 - 174
Target Start/End: Original strand, 51906415 - 51906469
Alignment:
Q  120 tttaggattaaatatgattttagtccttacattttgtgcctatttgaagaatagt 174  Q
    |||||| ||||||||| |||||||| |||||||||| |||| |||||||||||||    
T  51906415 tttagggttaaatatgtttttagtctttacattttgcgcctctttgaagaatagt 51906469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 172
Target Start/End: Original strand, 3296545 - 3296590
Alignment:
Q  127 ttaaatatgattttagtccttacattttgtgcctatttgaagaata 172  Q
    ||||||||| ||||||||||||||||||| |||  |||||||||||    
T  3296545 ttaaatatgtttttagtccttacattttgcgcccctttgaagaata 3296590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 189
Target Start/End: Original strand, 5544796 - 5544848
Alignment:
Q  137 ttttagtccttacattttgtgcctatttgaagaatagttcatatattttatta 189  Q
    |||||||||| |||||||| ||  |||||||||||||||| ||||||| ||||    
T  5544796 ttttagtcctcacattttgcgcgcatttgaagaatagttcctatatttcatta 5544848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 114 - 189
Target Start/End: Complemental strand, 10466880 - 10466805
Alignment:
Q  114 attttatttaggattaaatatgattttagtccttacattttgtgcctatttgaagaatagttcatatattttatta 189  Q
    |||||||||||| ||||||||| ||||| || |||||||||| | ||||||||||||||||   ||||||||||||    
T  10466880 attttatttagggttaaatatgtttttaatctttacattttgcgtctatttgaagaatagtctctatattttatta 10466805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 125 - 189
Target Start/End: Original strand, 30938595 - 30938659
Alignment:
Q  125 gattaaatatgattttagtccttacattttgtgcctatttgaagaatagttcatatattttatta 189  Q
    ||||||||||| ||||||||||||||||||| |||| ||| ||||||| | |||| |||||||||    
T  30938595 gattaaatatgtttttagtccttacattttgcgcctctttaaagaataatccatacattttatta 30938659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 127 - 174
Target Start/End: Original strand, 32092230 - 32092277
Alignment:
Q  127 ttaaatatgattttagtccttacattttgtgcctatttgaagaatagt 174  Q
    ||||||||| ||||||||||||||||||| |||| |||||||||||||    
T  32092230 ttaaatatgtttttagtccttacattttgcgcctctttgaagaatagt 32092277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 127 - 174
Target Start/End: Complemental strand, 17075705 - 17075658
Alignment:
Q  127 ttaaatatgattttagtccttacattttgtgcctatttgaagaatagt 174  Q
    ||||||||  ||||||||||||||||||| |||| |||||||||||||    
T  17075705 ttaaatatctttttagtccttacattttgcgcctctttgaagaatagt 17075658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 123 - 174
Target Start/End: Complemental strand, 20544402 - 20544351
Alignment:
Q  123 aggattaaatatgattttagtccttacattttgtgcctatttgaagaatagt 174  Q
    ||||||||||||| |||||||||||| ||||||  ||| |||||||||||||    
T  20544402 aggattaaatatgtttttagtccttatattttgcacctttttgaagaatagt 20544351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 174
Target Start/End: Original strand, 17075215 - 17075268
Alignment:
Q  121 ttaggattaaatatgattttagtccttacattttgtgcctatttgaagaatagt 174  Q
    ||||| ||||||||| |||||||||||| |||||| |||  |||||||||||||    
T  17075215 ttagggttaaatatgtttttagtccttatattttgcgccgctttgaagaatagt 17075268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 155
Target Start/End: Original strand, 11974666 - 11974694
Alignment:
Q  127 ttaaatatgattttagtccttacattttg 155  Q
    |||||||||||||||||||||||||||||    
T  11974666 ttaaatatgattttagtccttacattttg 11974694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 157
Target Start/End: Complemental strand, 12933159 - 12933119
Alignment:
Q  117 ttatttaggattaaatatgattttagtccttacattttgtg 157  Q
    ||||||||| ||||||||| ||||||||| |||||||||||    
T  12933159 ttatttagggttaaatatgtttttagtccctacattttgtg 12933119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 131 - 193
Target Start/End: Complemental strand, 7344940 - 7344878
Alignment:
Q  131 atatgattttagtccttacattttgtgcctatttgaagaatagttcatatattttattatatg 193  Q
    ||||| |||||||||||||||||||||||  ||||||||||| | |||| |||||||||||||    
T  7344940 atatgtttttagtccttacattttgtgcccctttgaagaataatccatacattttattatatg 7344878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 121 - 189
Target Start/End: Complemental strand, 26997963 - 26997895
Alignment:
Q  121 ttaggattaaatatgattttagtccttacattttgtgcctatttgaagaatagttcatatattttatta 189  Q
    ||||| ||||||||| ||||||| ||||||||||| | | |||||||||||||| |||| |||| ||||    
T  26997963 ttagggttaaatatgtttttagttcttacattttgcgtccatttgaagaatagtccatacatttcatta 26997895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 127 - 174
Target Start/End: Original strand, 13315204 - 13315251
Alignment:
Q  127 ttaaatatgattttagtccttacattttgtgcctatttgaagaatagt 174  Q
    ||||||||| ||||||||||||||||||| ||| |||| |||||||||    
T  13315204 ttaaatatgtttttagtccttacattttgcgcccatttaaagaatagt 13315251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 127 - 189
Target Start/End: Original strand, 6297464 - 6297526
Alignment:
Q  127 ttaaatatgattttagtccttacattttgtgcctatttgaagaatagttcatatattttatta 189  Q
    |||||||||  |||||||||||||||||| |||  ||||||||||||||| || |||| ||||    
T  6297464 ttaaatatgtctttagtccttacattttgcgcccctttgaagaatagttcctacatttcatta 6297526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 127 - 189
Target Start/End: Original strand, 9800041 - 9800103
Alignment:
Q  127 ttaaatatgattttagtccttacattttgtgcctatttgaagaatagttcatatattttatta 189  Q
    ||||||||| |||||||||||| |||||| |||| ||||||||||| | | || |||||||||    
T  9800041 ttaaatatgtttttagtccttagattttgcgcctctttgaagaataatccttacattttatta 9800103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 189
Target Start/End: Complemental strand, 16662558 - 16662497
Alignment:
Q  128 taaatatgattttagtccttacattttgtgcctatttgaagaatagttcatatattttatta 189  Q
    |||||||| ||||||||||||||||||| ||   ||||||||||||||| || |||| ||||    
T  16662558 taaatatgtttttagtccttacattttgcgctcttttgaagaatagttcctacatttcatta 16662497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 172
Target Start/End: Complemental strand, 17915594 - 17915549
Alignment:
Q  127 ttaaatatgattttagtccttacattttgtgcctatttgaagaata 172  Q
    ||||||||| ||||||||||||||||||||||   |||||||||||    
T  17915594 ttaaatatgtttttagtccttacattttgtgctcctttgaagaata 17915549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 174
Target Start/End: Original strand, 10047476 - 10047528
Alignment:
Q  122 taggattaaatatgattttagtccttacattttgtgcctatttgaagaatagt 174  Q
    |||| ||||||||| ||||| ||||||||||||| |||  |||||||||||||    
T  10047476 tagggttaaatatgtttttaatccttacattttgcgcccttttgaagaatagt 10047528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 189
Target Start/End: Original strand, 17914193 - 17914261
Alignment:
Q  121 ttaggattaaatatgattttagtccttacattttgtgcctatttgaagaatagttcatatattttatta 189  Q
    ||||| ||||||||| ||| |||| |||||||||| | || ||||||||||||| | || |||||||||    
T  17914193 ttagggttaaatatgttttaagtctttacattttgcgtctctttgaagaatagtccctacattttatta 17914261  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 120 - 174
Target Start/End: Original strand, 4510183 - 4510237
Alignment:
Q  120 tttaggattaaatatgattttagtccttacattttgtgcctatttgaagaatagt 174  Q
    |||||| ||||||||| ||||||||||||||||||  ||||||||||||||||||    
T  4510183 tttagggttaaatatgtttttagtccttacattttacgcctatttgaagaatagt 4510237  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 127 - 174
Target Start/End: Complemental strand, 211809 - 211762
Alignment:
Q  127 ttaaatatgattttagtccttacattttgtgcctatttgaagaatagt 174  Q
    ||||||||| ||||| ||||||||||||| ||||||||||||||||||    
T  211809 ttaaatatgtttttaatccttacattttgcgcctatttgaagaatagt 211762  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 127 - 174
Target Start/End: Original strand, 211443 - 211490
Alignment:
Q  127 ttaaatatgattttagtccttacattttgtgcctatttgaagaatagt 174  Q
    ||||||||| ||||||||||||||||||| |||  |||||||||||||    
T  211443 ttaaatatgtttttagtccttacattttgcgcccctttgaagaatagt 211490  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 127 - 174
Target Start/End: Complemental strand, 7646070 - 7646023
Alignment:
Q  127 ttaaatatgattttagtccttacattttgtgcctatttgaagaatagt 174  Q
    ||||||||| ||||||||||||||||||||||   |||||||||||||    
T  7646070 ttaaatatgtttttagtccttacattttgtgctcctttgaagaatagt 7646023  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 127 - 174
Target Start/End: Complemental strand, 17157921 - 17157874
Alignment:
Q  127 ttaaatatgattttagtccttacattttgtgcctatttgaagaatagt 174  Q
    ||||||||| ||||||||||||||||||| |||  |||||||||||||    
T  17157921 ttaaatatgtttttagtccttacattttgcgccactttgaagaatagt 17157874  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 123 - 189
Target Start/End: Original strand, 19976162 - 19976228
Alignment:
Q  123 aggattaaatatgattttagtccttacattttgtgcctatttgaagaatagttcatatattttatta 189  Q
    ||||||||||||| |||||||| |||||||||| || | ||||||||||||||| ||| ||||||||    
T  19976162 aggattaaatatgtttttagtcgttacattttgcgcttctttgaagaatagttcttattttttatta 19976228  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 127 - 189
Target Start/End: Complemental strand, 31436471 - 31436409
Alignment:
Q  127 ttaaatatgattttagtccttacattttgtgcctatttgaagaatagttcatatattttatta 189  Q
    ||||||||||||||||||||||||||||||| |  |||||||||||||   ||||||||||||    
T  31436471 ttaaatatgattttagtccttacattttgtgtccttttgaagaatagtcactatattttatta 31436409  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 127 - 189
Target Start/End: Complemental strand, 3591425 - 3591363
Alignment:
Q  127 ttaaatatgattttagtccttacattttgtgcctatttgaagaatagttcatatattttatta 189  Q
    ||||||||  ||||||||||||||||||| ||  |||||||||||||| |||| |||||||||    
T  3591425 ttaaatatatttttagtccttacattttgcgctcatttgaagaatagtccatacattttatta 3591363  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 124 - 189
Target Start/End: Original strand, 6751046 - 6751111
Alignment:
Q  124 ggattaaatatgattttagtccttacattttgtgcctatttgaagaatagttcatatattttatta 189  Q
    ||||||||||||  ||||||| ||||||||||||||| ||||||||||| | | ||||||| ||||    
T  6751046 ggattaaatatgtgtttagtctttacattttgtgcctctttgaagaataatccttatatttcatta 6751111  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 129 - 184
Target Start/End: Complemental strand, 19976520 - 19976465
Alignment:
Q  129 aaatatgattttagtccttacattttgtgcctatttgaagaatagttcatatattt 184  Q
    ||||||| || ||||| |||||||||||| || ||||||||||||||| |||||||    
T  19976520 aaatatgtttgtagtctttacattttgtgtctctttgaagaatagttcctatattt 19976465  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 127 - 189
Target Start/End: Complemental strand, 9880878 - 9880816
Alignment:
Q  127 ttaaatatgattttagtccttacattttgtgcctatttgaagaatagttcatatattttatta 189  Q
    ||||||||| ||||| | ||||||||||| ||  |||||||||||||||  ||||||||||||    
T  9880878 ttaaatatgtttttaattcttacattttgcgctcatttgaagaatagtttctatattttatta 9880816  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 127 - 189
Target Start/End: Original strand, 19895402 - 19895464
Alignment:
Q  127 ttaaatatgattttagtccttacattttgtgcctatttgaagaatagttcatatattttatta 189  Q
    ||||||||| |||||||||||||||||| |||   ||||||||||||| |||| |||| ||||    
T  19895402 ttaaatatgtttttagtccttacattttatgctcgtttgaagaatagtccatacatttaatta 19895464  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 127 - 157
Target Start/End: Complemental strand, 32596403 - 32596373
Alignment:
Q  127 ttaaatatgattttagtccttacattttgtg 157  Q
    |||||||||||||||||||||||||||||||    
T  32596403 ttaaatatgattttagtccttacattttgtg 32596373  T

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Target: scaffold0009 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 119 - 171
Target Start/End: Complemental strand, 108218 - 108166
Alignment:
Q  119 atttaggattaaatatgattttagtccttacattttgtgcctatttgaagaat 171  Q
    ||||||||||||||||| ||||||||||||||||||| |||  ||||||||||    
T  108218 atttaggattaaatatgtttttagtccttacattttgcgcccttttgaagaat 108166  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 174
Target Start/End: Complemental strand, 21217414 - 21217362
Alignment:
Q  122 taggattaaatatgattttagtccttacattttgtgcctatttgaagaatagt 174  Q
    |||| ||||||||| ||||||||||||||||||| |||  |||||||||||||    
T  21217414 tagggttaaatatgtttttagtccttacattttgcgccgctttgaagaatagt 21217362  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 127 - 174
Target Start/End: Original strand, 2191219 - 2191266
Alignment:
Q  127 ttaaatatgattttagtccttacattttgtgcctatttgaagaatagt 174  Q
    ||||||||| ||||||||||||||||||| |||  |||||||||||||    
T  2191219 ttaaatatgtttttagtccttacattttgcgcccctttgaagaatagt 2191266  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 127 - 174
Target Start/End: Original strand, 21182309 - 21182356
Alignment:
Q  127 ttaaatatgattttagtccttacattttgtgcctatttgaagaatagt 174  Q
    ||||||||| ||||||||||||||||||| |||  |||||||||||||    
T  21182309 ttaaatatgtttttagtccttacattttgcgcccctttgaagaatagt 21182356  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 127 - 174
Target Start/End: Original strand, 21216925 - 21216972
Alignment:
Q  127 ttaaatatgattttagtccttacattttgtgcctatttgaagaatagt 174  Q
    ||||||||  ||||||||||||||||||| |||| |||||||||||||    
T  21216925 ttaaatatctttttagtccttacattttgcgcctctttgaagaatagt 21216972  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 127 - 174
Target Start/End: Original strand, 21264993 - 21265040
Alignment:
Q  127 ttaaatatgattttagtccttacattttgtgcctatttgaagaatagt 174  Q
    ||||||||| ||||||||||||||||||| |||  |||||||||||||    
T  21264993 ttaaatatgtttttagtccttacattttgcgccgctttgaagaatagt 21265040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 127 - 174
Target Start/End: Complemental strand, 21265477 - 21265430
Alignment:
Q  127 ttaaatatgattttagtccttacattttgtgcctatttgaagaatagt 174  Q
    ||||||||  ||||||||||||||||||| |||| |||||||||||||    
T  21265477 ttaaatatctttttagtccttacattttgcgcctctttgaagaatagt 21265430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 122 - 189
Target Start/End: Complemental strand, 24093649 - 24093582
Alignment:
Q  122 taggattaaatatgattttagtccttacattttgtgcctatttgaagaatagttcatatattttatta 189  Q
    |||||||||||||  |||||  ||||||||||||  || |||||||||||||| | ||||||||||||    
T  24093649 taggattaaatatctttttaacccttacattttgcacccatttgaagaatagtgcctatattttatta 24093582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 120 - 174
Target Start/End: Original strand, 2517408 - 2517462
Alignment:
Q  120 tttaggattaaatatgattttagtccttacattttgtgcctatttgaagaatagt 174  Q
    |||||| ||||||||  ||||||||||||||||||| | || |||||||||||||    
T  2517408 tttagggttaaatatatttttagtccttacattttgcgtctctttgaagaatagt 2517462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 127 - 189
Target Start/End: Complemental strand, 8750448 - 8750386
Alignment:
Q  127 ttaaatatgattttagtccttacattttgtgcctatttgaagaatagttcatatattttatta 189  Q
    ||||||||| ||||||||||||||||||| |  | ||||||||||||| | || |||||||||    
T  8750448 ttaaatatgtttttagtccttacattttgcgtttctttgaagaatagtccctacattttatta 8750386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 127 - 189
Target Start/End: Original strand, 16284276 - 16284338
Alignment:
Q  127 ttaaatatgattttagtccttacattttgtgcctatttgaagaatagttcatatattttatta 189  Q
    ||||||||| ||||||||||||||||||| |  | |||||||||||||   ||||||||||||    
T  16284276 ttaaatatgtttttagtccttacattttgcgtttttttgaagaatagtctttatattttatta 16284338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 155
Target Start/End: Complemental strand, 8648153 - 8648125
Alignment:
Q  127 ttaaatatgattttagtccttacattttg 155  Q
    |||||||||||||||||||||||||||||    
T  8648153 ttaaatatgattttagtccttacattttg 8648125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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