View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0559_low_4 (Length: 523)
Name: NF0559_low_4
Description: NF0559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0559_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 174; Significance: 2e-93; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 287 - 464
Target Start/End: Complemental strand, 49290940 - 49290763
Alignment:
| Q |
287 |
catctgacagtaacctagaattgaaacccgttggaacactagatgtaaaactagtgcaggcaaagaacttaacaaataaagatataattggaaaatctga |
386 |
Q |
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| T |
49290940 |
catctgacagtaacctagaattgaaacccgttggaacactagatgtaaaactagtgcaggcaaagaacttatcaaataaagatataattggaaaatctga |
49290841 |
T |
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| Q |
387 |
tccttttgctgtggtatttgtacgcccactccgtgacaaaaccaaaaccagtaaaataattgtaagtccctatttatt |
464 |
Q |
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| T |
49290840 |
tccttttgctgtggtatttgtacgcccactccgtgacaaaaccaaaaccagtaaaataattgtaagtccctatttatt |
49290763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 93 - 233
Target Start/End: Complemental strand, 49291123 - 49290992
Alignment:
| Q |
93 |
caaattcatgttgatgaatcttcaattttctgagagagttgattgctatcttggttgttggcatgtattgatcgtattgcattttattttggaattataa |
192 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49291123 |
caaattcatgttgatgaatcttcaattttctgagagagttgattgctatcttggttgttggcatgtattgatcgtattgcattttattttggaattataa |
49291024 |
T |
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| Q |
193 |
attaattatatcattgtcatttctacatgttttgaatatta |
233 |
Q |
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| T |
49291023 |
---------atcattgtcatttctacatgttttgaatatta |
49290992 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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