View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0559_low_46 (Length: 242)
Name: NF0559_low_46
Description: NF0559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0559_low_46 |
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Alignment Details
Target: chr4 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 8 - 96
Target Start/End: Original strand, 29637885 - 29637973
Alignment:
| Q |
8 |
ttttcataatacttattcaatccccaattaataaattggaacttacgacgaggatcaaaaattacagcaataaagaccaacatattcat |
96 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29637885 |
ttttcataatacttattcaatccccaattaataaattggaacttacgacgaggatcaaaaattacagcaataaagaccaacatattcat |
29637973 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 8 - 96
Target Start/End: Complemental strand, 38337162 - 38337074
Alignment:
| Q |
8 |
ttttcataatacttattcaatccccaattaataaattggaacttacgacgaggatcaaaaattacagcaataaagaccaacatattcat |
96 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
38337162 |
ttttcataatacttattcaatccccaattaataaattggaacttacgacgaggataaaaaattacagcaataaagaccaacatattcat |
38337074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 8 - 96
Target Start/End: Original strand, 20417891 - 20417979
Alignment:
| Q |
8 |
ttttcataatacttattcaatccccaattaataaattggaacttacgacgaggatcaaaaattacagcaataaagaccaacatattcat |
96 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
20417891 |
ttttcataatacttattcaatccccaattaataaattggaacttacgacgaggataaaaaattacagcaataaagaccaacatattcat |
20417979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 8 - 96
Target Start/End: Complemental strand, 3212150 - 3212062
Alignment:
| Q |
8 |
ttttcataatacttattcaatccccaattaataaattggaacttacgacgaggatcaaaaattacagcaataaagaccaacatattcat |
96 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
3212150 |
ttttcataatacttattcaatccccaattaataaattggaacttacaacgaggataaaaaattacagcaataaagaccaacatattcat |
3212062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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