View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0559_low_47 (Length: 221)
Name: NF0559_low_47
Description: NF0559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0559_low_47 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 31200601 - 31200381
Alignment:
| Q |
1 |
gaagtatacattagttaaatattaattttataaaactgtttgttgatttctgaatgctatcttattgactagtaagtatgcatgatacagggtgaaaaat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31200601 |
gaagtatacattagttaaatattaattttataaaactgtttgttgatttctgaatgctatcttattgactagtaagtatgcatgatacagggtgaaaaat |
31200502 |
T |
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| Q |
101 |
ccaaaatcatgtacattttcttcaaaaatgcgattttatggaaacacaatttctggagtgtgactgcaggttcatgctcaagctccttttttatgcttgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31200501 |
ccaaaatcatgtacattttcttcaaaaatgcgattttatggaaacacaatttctggagtgtgactgcaggttcatgctcaagctccttttttatgcttgt |
31200402 |
T |
|
| Q |
201 |
gtttggttcagagcacaacct |
221 |
Q |
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||||||||||||||||||||| |
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| T |
31200401 |
gtttggttcagagcacaacct |
31200381 |
T |
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