View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0559_low_8 (Length: 438)
Name: NF0559_low_8
Description: NF0559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0559_low_8 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 202 - 427
Target Start/End: Complemental strand, 30628562 - 30628337
Alignment:
| Q |
202 |
acccaatattatattttattctaaacttctacttcaaataatctgattctcttagaattaaattgttccttattttgtaggtgtattagtaaaaatataa |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30628562 |
acccaatattatattttattctaaacttctacttcaaataatctgattctcttagaattaaattgttccttattttgtaggtgtattagtaaaaatataa |
30628463 |
T |
|
| Q |
302 |
gatgtcaaatagtgaacagtatacgtattttaacttgttgtaaagtaggcctaacccaagttcagtttccaatcaaataaaacccaattacactttttgt |
401 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30628462 |
gatgtcaaatagtgaacagtatacgtattttaacttgttgtaaagtaggcctaacccaagttcagtttccaatcaaataaaacccaattacactttttgt |
30628363 |
T |
|
| Q |
402 |
tttgaatttcttttcacacccttcat |
427 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
30628362 |
tttgaatttcttttcacacccttcat |
30628337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 30 - 186
Target Start/End: Complemental strand, 30628743 - 30628587
Alignment:
| Q |
30 |
attatatccgtccttccatctgctgcttctcggacacactttccccatgccacctgacccacatgcctatttgatgggtattttcaaatgtctagttagt |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30628743 |
attatatccgtccttccatctgctgcttctcggacacactttccccatgccacctgacccacatgcctatttgatgggtattttcaaatgtctagttagt |
30628644 |
T |
|
| Q |
130 |
agacctgttgagggatttaccataaattttggtaatgaattatcatgagataatata |
186 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30628643 |
agacctgttgagggatttaccataaattttggtaatgaattatcatgagataatata |
30628587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1298 times since January 2019
Visitors: 3643