View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0559_low_9 (Length: 436)

Name: NF0559_low_9
Description: NF0559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0559_low_9
NF0559_low_9
[»] chr2 (9 HSPs)
chr2 (9-407)||(5592346-5592726)
chr2 (9-261)||(5586077-5586329)
chr2 (259-407)||(5586352-5586500)
chr2 (13-199)||(5575607-5575793)
chr2 (302-407)||(5572884-5572989)
chr2 (283-407)||(5575896-5576020)
chr2 (9-54)||(5572667-5572712)
chr2 (9-54)||(5580486-5580531)
chr2 (159-197)||(5580576-5580614)


Alignment Details
Target: chr2 (Bit Score: 260; Significance: 1e-145; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 9 - 407
Target Start/End: Original strand, 5592346 - 5592726
Alignment:
Q  9 agcagagaacttattattgaaatgatccactagagatttaagcttgaaatcaaaaatggatgcgatgtcattttgctcctcaacacaagacccatctgtc 108  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||    
T  5592346 agcagagaacttattattgaaatgatccactaaagatttaagcttgaaatcaaaaatggatgcaatgtcattttgctcctcaacacaagacccatatgtc 5592445  T
Q  109 ccatgagtaaagatggcacttggagtgcagcccaataggcctaacccagataacacatattttcttgctccaatttcatgtaaagcctgttccatgtacc 208  Q
     ||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  5592446 tcatgagtaaggatggcacttggagtgcagcccaataggcctaacccaggtaacacatattttcttgctccaatttcatgtaaagcctgttacatatacc 5592545  T
Q  209 aaatgcctctattataaaccatgatattcataactaatgtaacttccattaatcatttagtgaaagtaaaagtgaaacacaaagttcaagtggatacctg 308  Q
    |||||| ||| |||||||||||||||||||||                  ||||||||||| |||| |||||||||||||||||||||||||||||||||    
T  5592546 aaatgcttctgttataaaccatgatattcata------------------aatcatttagtaaaagcaaaagtgaaacacaaagttcaagtggatacctg 5592627  T
Q  309 taaattcaaagataactcttcaattagagcttctgcgtactgctgagggctataaatgtggcttgttggatataattggggaagaaagtaattatttat 407  Q
    ||||||||||||||||||||||||||||  |||||| ||||||| ||||||||||| || ||||| | |||||||||||||||||||||||||||||||    
T  5592628 taaattcaaagataactcttcaattagattttctgcatactgctcagggctataaacgttgcttgatagatataattggggaagaaagtaattatttat 5592726  T

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Target: chr2; HSP #2
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 9 - 261
Target Start/End: Original strand, 5586077 - 5586329
Alignment:
Q  9 agcagagaacttattattgaaatgatccactagagatttaagcttgaaatcaaaaatggatgcgatgtcattttgctcctcaacacaagacccatctgtc 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5586077 agcagagaacttattattgaaatgatccactagagatttaagcttgaaatcaaaaatggatgcgatgtcattttgctcctcaacacaagacccatctgtc 5586176  T
Q  109 ccatgagtaaagatggcacttggagtgcagcccaataggcctaacccagataacacatattttcttgctccaatttcatgtaaagcctgttccatgtacc 208  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5586177 ccatgagtaaagatggcacttggagtgcagcccaatagacctaacccagataacacatattttcttgctccaatttcatgtaaagcctgttccatgtacc 5586276  T
Q  209 aaatgcctctattataaaccatgatattcataactaatgtaacttccattaat 261  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5586277 aaatgcctctattataaaccatgatattcataactaatgtaacttccattaat 5586329  T

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Target: chr2; HSP #3
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 259 - 407
Target Start/End: Original strand, 5586352 - 5586500
Alignment:
Q  259 aatcatttagtgaaagtaaaagtgaaacacaaagttcaagtggatacctgtaaattcaaagataactcttcaattagagcttctgcgtactgctgagggc 358  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5586352 aatcatttagtgaaagtaaaagtgaaacacaaagttcaaggggatacctgtaaattcaaagataactcttcaattagagcttctgcgtactgctgagggc 5586451  T
Q  359 tataaatgtggcttgttggatataattggggaagaaagtaattatttat 407  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||    
T  5586452 tataaatgtgtcttgttggatataattggggaagaaagtaattatttat 5586500  T

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Target: chr2; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 13 - 199
Target Start/End: Original strand, 5575607 - 5575793
Alignment:
Q  13 gagaacttattattgaaatgatccactagagatttaagcttgaaatcaaaaatggatgcgatgtcattttgctcctcaacacaagacccatctgtcccat 112  Q
    |||||||||||||||||||||||||||| | |||||||||||||||  |||||  ||||   | |||||| ||| ||||| || ||||| | ||| ||||    
T  5575607 gagaacttattattgaaatgatccactaaaaatttaagcttgaaattgaaaatcaatgcaggggcattttcctcatcaacgcaggacccgtttgttccat 5575706  T
Q  113 gagtaaagatggcacttggagtgcagcccaataggcctaacccagataacacatattttcttgctccaatttcatgtaaagcctgtt 199  Q
    ||||||||||||||||||| ||||||||||| |||||||||||   ||||||||||||||| |||||||| |||||||||| |||||    
T  5575707 gagtaaagatggcacttggtgtgcagcccaaaaggcctaaccctactaacacatattttctagctccaatgtcatgtaaagtctgtt 5575793  T

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Target: chr2; HSP #5
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 302 - 407
Target Start/End: Original strand, 5572884 - 5572989
Alignment:
Q  302 atacctgtaaattcaaagataactcttcaattagagcttctgcgtactgctgagggctataaatgtggcttgttggatataattggggaagaaagtaatt 401  Q
    ||||| ||||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||| |||||||| || ||||||||||||||||||||    
T  5572884 ataccagtaaattcaaagataactcttgaattagagcttctgcatactgctcagggctataaatgtgacttgttgggtagaattggggaagaaagtaatt 5572983  T
Q  402 atttat 407  Q
     |||||    
T  5572984 gtttat 5572989  T

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Target: chr2; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 283 - 407
Target Start/End: Original strand, 5575896 - 5576020
Alignment:
Q  283 aaacacaaagttcaagtggatacctgtaaattcaaagataactcttcaattagagcttctgcgtactgctgagggctataaatgtggcttgttggatata 382  Q
    ||||||| ||||  ||||||||||  |||||| ||||||||||||| ||||||||||||||| || |||| |||||||||||| || |||||||| || |    
T  5575896 aaacacagagtttgagtggataccaataaatttaaagataactcttgaattagagcttctgcatattgctcagggctataaatttgacttgttgggtaga 5575995  T
Q  383 attggggaagaaagtaattatttat 407  Q
    |||| ||| |||||||||| |||||    
T  5575996 attgaggacgaaagtaattgtttat 5576020  T

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Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 9 - 54
Target Start/End: Original strand, 5572667 - 5572712
Alignment:
Q  9 agcagagaacttattattgaaatgatccactagagatttaagcttg 54  Q
    |||||||||||||||||||||||| |||||||||||||||||||||    
T  5572667 agcagagaacttattattgaaatgttccactagagatttaagcttg 5572712  T

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Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 9 - 54
Target Start/End: Original strand, 5580486 - 5580531
Alignment:
Q  9 agcagagaacttattattgaaatgatccactagagatttaagcttg 54  Q
    |||||||||||||||||||||||| |||||||||||||||||||||    
T  5580486 agcagagaacttattattgaaatgttccactagagatttaagcttg 5580531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 159 - 197
Target Start/End: Original strand, 5580576 - 5580614
Alignment:
Q  159 taacacatattttcttgctccaatttcatgtaaagcctg 197  Q
    |||||||||||||||||||||||| ||||||| ||||||    
T  5580576 taacacatattttcttgctccaatgtcatgtagagcctg 5580614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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