View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0560_low_1 (Length: 345)
Name: NF0560_low_1
Description: NF0560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0560_low_1 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 22 - 345
Target Start/End: Complemental strand, 19345510 - 19345187
Alignment:
| Q |
22 |
atcatcaatggtagagccactcatctctcctatgaggtgagaagcaagggttatatctctaacaccctccaaagctgcagcagcctaggaaaattaggac |
121 |
Q |
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| T |
19345510 |
atcatcaatggtagagccactcatatctcctatgaggtgagaagcaagggttatatctctaacaccctccaaagctgcagcagcctaggaaaattagggc |
19345411 |
T |
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| Q |
122 |
aaagattcagtcttcaaaaatagtggttgaaccaataaatgtagggactaattaggcttacatgatctgcaatctcttgataatctctaaaaatgaaagg |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19345410 |
aaagattcagtcttcaaaaatagtggttgaaccaataaatgtagggactaattaggcttacatgatctgcaatctcttgataatctctaaaaatgaaagg |
19345311 |
T |
|
| Q |
222 |
ccttgtggagtgcatcagagtgaaccatttctggctaaaatcagaccaaatagcatcagccttgggccctgtctccttcaatgttttcactttctctatg |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19345310 |
ccttgtggagtgcatcagagtgaaccatttctggctaaaatcagaccaaatagcatcagccttgggccctgtctccttcaatgttttcactttctctatg |
19345211 |
T |
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| Q |
322 |
aattccaacagaatttcctcacct |
345 |
Q |
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|||||||||||||||||||||||| |
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| T |
19345210 |
aattccaacagaatttcctcacct |
19345187 |
T |
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