View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0563_low_1 (Length: 532)
Name: NF0563_low_1
Description: NF0563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0563_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 383; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 14 - 443
Target Start/End: Complemental strand, 29540716 - 29540284
Alignment:
| Q |
14 |
agaaggaattcatagatatgctcaaattgttggagaaacagctgggagacaaggcttattttggaggagacaaacttggtttggtagatatagccctaat |
113 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
29540716 |
agaaggaattcatagatatgctcaaattgttggagaaacagctgggagacaaggcttattttggaggagacagacttggtttggtagatatagccctaat |
29540617 |
T |
|
| Q |
114 |
cccattctacagttggtttgaaaccgatgagaagtttggaaaccttaatatagagattgagtgccctaagttcattgcatgggctaatcggtgcatgcag |
213 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29540616 |
cccattctacagttggtttgaaacctatgagaagtttggaaaccttaatatagagattgagtgccctaagttcattgcatgggctaatcggtgcatgcag |
29540517 |
T |
|
| Q |
214 |
attgagagtgtttccaagtct---cttcctaaccagcataaggtctatgagttcattgcagatgccctaaagaaatttggcattaagtagattgaaaatg |
310 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| ||||| |
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| T |
29540516 |
attgagagtgtttccaagtctcttcttcctaaccagcataaggtctatgagttcattgcagatgccctaaagaaattaggtattaagtagattggaaatg |
29540417 |
T |
|
| Q |
311 |
tttgactacaatgaagtatgcacttgtctatttgattggttgcttcacctatttatatggaataattttgtaatagaaggaagcacttagatgtgctaaa |
410 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29540416 |
tttgactacaatgaagtatgcacttgtctttttgattggttgcttcacctatttttatggaataattttgtaatagaaggaagcacttagatgtgctaaa |
29540317 |
T |
|
| Q |
411 |
ctttatgctttgagcaagaaaagttttgaataa |
443 |
Q |
| |
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|||||||||||||| |||||| ||||||||||| |
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|
| T |
29540316 |
ctttatgctttgaggaagaaaggttttgaataa |
29540284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 14 - 267
Target Start/End: Complemental strand, 29544351 - 29544098
Alignment:
| Q |
14 |
agaaggaattcatagatatgctcaaattgttggagaaacagctgggagacaaggcttattttggaggagacaaacttggtttggtagatatagccctaat |
113 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| | ||| | ||||| | |||||||||||||||||||| ||||||| || |||||| | || || |
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|
| T |
29544351 |
agaaggaattcatagatactctcaaattgttggaggatcagttaggagagagctcttattttggaggagacaaatttggttttgtcgatatatcacttat |
29544252 |
T |
|
| Q |
114 |
cccattctacagttggtttgaaaccgatgagaagtttggaaaccttaatatagagattgagtgccctaagttcattgcatgggctaatcggtgcatgcag |
213 |
Q |
| |
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||||||||||| | || || |||||| ||||| ||||| ||| |||||| |||||| |||||||||||||| |||||||| | ||||||||| |
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|
| T |
29544251 |
tccattctacagccgattaaaagtttatgagacctttggcaacctcaatttagagaatgagtgtcctaagttcattgcttgggctaagagatgcatgcag |
29544152 |
T |
|
| Q |
214 |
attgagagtgtttccaagtctcttcctaaccagcataaggtctatgagttcatt |
267 |
Q |
| |
|
||||| |||||||||||||||||||| ||||| ||||| |||| ||||||||| |
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|
| T |
29544151 |
attgaaagtgtttccaagtctcttccagaccaggataagatctacgagttcatt |
29544098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 14 - 233
Target Start/End: Complemental strand, 29517102 - 29516883
Alignment:
| Q |
14 |
agaaggaattcatagatatgctcaaattgttggagaaacagctgggagacaaggcttattttggaggagacaaacttggtttggtagatatagccctaat |
113 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| || |||||||||||||| |||| |||||||||||||| ||||||| || ||| |||| || || |
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|
| T |
29517102 |
agaaggaattcatagaggctctcaaattgttggagcaagagctgggagacaagacttactttggaggagacaagattggttttgtggatgtagcacttat |
29517003 |
T |
|
| Q |
114 |
cccattctacagttggtttgaaaccgatgagaagtttggaaaccttaatatagagattgagtgccctaagttcattgcatgggctaatcggtgcatgcag |
213 |
Q |
| |
|
|||||||||| ||||||| || | |||||| ||||| ||| | ||| |||||| || ||||||||||||||||| ||||| || | ||||||||| |
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|
| T |
29517002 |
tccattctacacttggtttaaaggctatgagacctttggcaacatcaatgtagagaaggaatgccctaagttcattgcttgggccaagagatgcatgcag |
29516903 |
T |
|
| Q |
214 |
attgagagtgtttccaagtc |
233 |
Q |
| |
|
|||||||| |||||||||| |
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|
| T |
29516902 |
gttgagagtatttccaagtc |
29516883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 34 - 233
Target Start/End: Complemental strand, 29510194 - 29509995
Alignment:
| Q |
34 |
ctcaaattgttggagaaacagctgggagacaaggcttattttggaggagacaaacttggtttggtagatatagccctaatcccattctacagttggtttg |
133 |
Q |
| |
|
||||||||||||||| || |||||||||||||| |||| |||||||||||||| ||||||| || ||| |||| || || |||||||||| ||||||| |
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|
| T |
29510194 |
ctcaaattgttggagcaagagctgggagacaagacttactttggaggagacaagattggttttgtggatgtagcacttattccattctacacttggttta |
29510095 |
T |
|
| Q |
134 |
aaaccgatgagaagtttggaaaccttaatatagagattgagtgccctaagttcattgcatgggctaatcggtgcatgcagattgagagtgtttccaagtc |
233 |
Q |
| |
|
|| | |||||| ||||| ||| | ||| |||||| || ||||||||||||||||| ||||| || | ||||||||| |||||||| |||||||||| |
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|
| T |
29510094 |
aaggctatgagacctttggcaacatcaatgtagagaaggaatgccctaagttcattgcttgggccaagagatgcatgcaggttgagagtatttccaagtc |
29509995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 14 - 240
Target Start/End: Complemental strand, 29534776 - 29534550
Alignment:
| Q |
14 |
agaaggaattcatagatatgctcaaattgttggagaaacagctgggagacaaggcttattttggaggagacaaacttggtttggtagatatagccctaat |
113 |
Q |
| |
|
|||| ||||||||||| | | ||||||||||||| | | ||||||||||| |||||||||||||||| || |||||||| || ||| |||| || || |
|
|
| T |
29534776 |
agaaagaattcatagaagtccacaaattgttggagctagaattgggagacaagacttattttggaggagataagcttggttttgtcgatgtagcacttat |
29534677 |
T |
|
| Q |
114 |
cccattctacagttggtttgaaaccgatgagaagtttggaaaccttaatatagagattgagtgccctaagttcattgcatgggctaatcggtgcatgcag |
213 |
Q |
| |
|
|||| ||||| ||||||| ||| |||||| ||||| ||| | | | |||| | || ||||||||||||||||| ||||| || || |||||| |
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|
| T |
29534676 |
tccatactacacttggtttaaaagttatgagacctttggcaacatcagtctagaaaaggaatgccctaagttcattgcttgggccaagaaatgtatgcag |
29534577 |
T |
|
| Q |
214 |
attgagagtgtttccaagtctcttcct |
240 |
Q |
| |
|
|||||||||||||| |||||||||||| |
|
|
| T |
29534576 |
attgagagtgtttcaaagtctcttcct |
29534550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 172 - 233
Target Start/End: Complemental strand, 29506858 - 29506797
Alignment:
| Q |
172 |
gagtgccctaagttcattgcatgggctaatcggtgcatgcagattgagagtgtttccaagtc |
233 |
Q |
| |
|
||||||||||||||| |||| ||||| ||| | |||||| |||||||||||||||||||||| |
|
|
| T |
29506858 |
gagtgccctaagttctttgcttgggccaatagatgcatggagattgagagtgtttccaagtc |
29506797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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