View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0563_low_2 (Length: 500)
Name: NF0563_low_2
Description: NF0563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0563_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 127; Significance: 2e-65; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 12 - 142
Target Start/End: Complemental strand, 50632659 - 50632529
Alignment:
| Q |
12 |
cagaacctgtgtggtcaacaataaacaagctatccgtgacatgaaagggggtttaaccttaaaatcactatgtcgactcaaagcccatggttacaaaaag |
111 |
Q |
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| T |
50632659 |
cagaaactgtgtggtcaacaataaacaagctatccgtgacatgaaagggggtttaaccttaaaatcactatgtcgactcaaagcccatggttacaaaaag |
50632560 |
T |
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| Q |
112 |
caacaaacaacttacatgtgacaacaataat |
142 |
Q |
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| T |
50632559 |
caacaaacaacttacatgtgacaacaataat |
50632529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 217 - 345
Target Start/End: Complemental strand, 50632421 - 50632290
Alignment:
| Q |
217 |
tagctcaccgaccaaactaccttaaatagcagccaagtgaaaacattggtcattcattcattcaacaaaaacaaacac---actcttgaattctagttga |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||| |
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| T |
50632421 |
tagctcaccgaccaaactaccttaaatagcagccaagtgaaaacattggtcattcattcattccacaaaaacaaacacactactcttgaattgtagttga |
50632322 |
T |
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| Q |
314 |
aagagaaaatgaagaaaacatcaacttgtgtg |
345 |
Q |
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| T |
50632321 |
aagagaaaatgaagaaaacatcaacttgtgtg |
50632290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 405 - 461
Target Start/End: Complemental strand, 50632230 - 50632174
Alignment:
| Q |
405 |
aatgaaggatgatttggtggaccaaatatgcaaacagacacccttttatgacctatg |
461 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50632230 |
aatgaaggatgatttggtggaccaaatatgcaaacagacacccttttatgacctatg |
50632174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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