View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0563_low_4 (Length: 338)
Name: NF0563_low_4
Description: NF0563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0563_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 93 - 236
Target Start/End: Original strand, 27577963 - 27578103
Alignment:
| Q |
93 |
attacgtcgatcagtctccaaaatcagtcactacaaaatttatagaattggtcactaaaatgcattaaacttgtttctaactacacatttgtgaataaaa |
192 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |||||||||||||| ||||||||| | |
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| T |
27577963 |
attacgtcgatcaatctccaaaatcagtcactacaaaatttatagaattggtcactaaaatgcactaaattggtttctaactacacgtttgtgaat---a |
27578059 |
T |
|
| Q |
193 |
atggtttaccactatatcacttcaagaaacaaggtacgtatatc |
236 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27578060 |
atggtttaccactatatcacttcaagaaacaaggtacgtatatc |
27578103 |
T |
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