View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0563_low_5 (Length: 323)
Name: NF0563_low_5
Description: NF0563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0563_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 170; Significance: 3e-91; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 103 - 280
Target Start/End: Complemental strand, 45345626 - 45345449
Alignment:
| Q |
103 |
tcacgtatgcattcagtttaaacttggcacctcacaaactccaagctgatctcttaatttttggaacacatcaagtttcaacggtttggtcataatatca |
202 |
Q |
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| T |
45345626 |
tcacatatgcattcagtttaaacttggcacctcacaaactccaagctgatctcttaatttttggaacacatcaagtttcaacggtttggtcataatatca |
45345527 |
T |
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| Q |
203 |
gctacttgatttcttgtgttacaatggaccagcttcaccacttcttctttagtgagatctctcaagaaatggaacctt |
280 |
Q |
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| T |
45345526 |
gctacttgatttcttgtgttacaatggaccagtttcaccacttcttctttagtgagatctctcaagaaatggaacctt |
45345449 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 24 - 106
Target Start/End: Complemental strand, 45345858 - 45345776
Alignment:
| Q |
24 |
tggaatgaaacaactaagtttattgaataacatagaggtggtatatatagccttacatgataagaaggaaaagttcaactcac |
106 |
Q |
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| T |
45345858 |
tggaatgaaacaactaagtttattgaataacatagaggtggtatatatagccttacatgataagaaggaaaagttcaactcac |
45345776 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 24 - 110
Target Start/End: Complemental strand, 45341505 - 45341419
Alignment:
| Q |
24 |
tggaatgaaacaactaagtttattgaataacatagaggtggtatatatagccttacatgataagaaggaaaagttcaactcacgtat |
110 |
Q |
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| T |
45341505 |
tggaatgaaaaaactaagtttattgaataacatagaggtggcatatatagccttacatgagaagaaggaaaagttcaactcacgtat |
45341419 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 76; Significance: 4e-35; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 109 - 228
Target Start/End: Original strand, 33361652 - 33361771
Alignment:
| Q |
109 |
atgcattcagtttaaacttggcacctcacaaactccaagctgatctcttaatttttggaacacatcaagtttcaacggtttggtcataatatcagctact |
208 |
Q |
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| T |
33361652 |
atgcattcaatttaaatttggcacctcacaaactccaagttgatctcttgatttatgaaatacatcaagtgtcaacggtttagtcacaatatcagctact |
33361751 |
T |
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| Q |
209 |
tgatttcttgtgttacaatg |
228 |
Q |
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| T |
33361752 |
tgattgcttgtgttacaatg |
33361771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 129 - 228
Target Start/End: Complemental strand, 33543351 - 33543249
Alignment:
| Q |
129 |
gcacctcacaaactccaagctgatctcttaatttttggaacacatcaagtttcaac---ggtttggtcataatatcagctacttgatttcttgtgttaca |
225 |
Q |
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| T |
33543351 |
gcacctcagaaactctaagttgatctcttgatttatggaatacatcaagtgtcaacaacggtttggtcacaatatcagctactcgattgcttgtgttaca |
33543252 |
T |
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| Q |
226 |
atg |
228 |
Q |
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||| |
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| T |
33543251 |
atg |
33543249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 24 - 83
Target Start/End: Original strand, 28302576 - 28302634
Alignment:
| Q |
24 |
tggaatgaaacaactaagtttattgaataacatagaggtggtatatatagccttacatga |
83 |
Q |
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| T |
28302576 |
tggaatgaaa-aactaactttattgaataacatagaggtggcatatatagccttacatga |
28302634 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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