View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0563_low_7 (Length: 252)
Name: NF0563_low_7
Description: NF0563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0563_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 56312905 - 56313125
Alignment:
| Q |
1 |
catagatccaaagctatagcacaccaaaacaata--gtagctagctgcgtgaaacttgcagccnnnnnnnnnnnnnnnntcaaattagttagaagccaag |
98 |
Q |
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| T |
56312905 |
catagatccaaagctatagcacaccaaaacaatatagtagctagctgcgtgaaacttgcagccatatatatatat----tcaaattagttagaagccaag |
56313000 |
T |
|
| Q |
99 |
aatgcaagagggagagagtgagcaattaattattacgtgatagaaattaaagaaagaaagagagtacaaattaaacagtgcctaaaatatattcatacaa |
198 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
56313001 |
aatgcaagagggagagagtgagcaattaattattacgtgatagaaattaaagaaagaaagagagtacaaattaaacagtacctaaaatatattcatacaa |
56313100 |
T |
|
| Q |
199 |
caactatcaccgtttgtgattaatt |
223 |
Q |
| |
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||||||||||||||||||||||||| |
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|
| T |
56313101 |
caactatcaccgtttgtgattaatt |
56313125 |
T |
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