View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0565_high_1 (Length: 461)
Name: NF0565_high_1
Description: NF0565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0565_high_1 |
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| [»] scaffold0041 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 395; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 26 - 449
Target Start/End: Complemental strand, 40665565 - 40665140
Alignment:
| Q |
26 |
atcagtttcaatgaccttaaactctacacttctcatccctccccgcacaagaaatagatctccttttctgacgggacgataagcttccacgaaatacgct |
125 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
40665565 |
atcagtttcaatgaccttaaactctacacttctcatccctccccgcacaagaaatagatctccttttctgacgggacgataagcttccacgaaataggct |
40665466 |
T |
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| Q |
126 |
gtaaattacatacattaaaaaagttaagacttgtgcaaa--gattaacatatacatataacatattcaaaatgtaaaattataatgcctctaagacacta |
223 |
Q |
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|||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
40665465 |
gtaaattatatacattaaaaaagttaagacttgtgcaaaaagattaacatatacatataacatattcaaaatgtaaaattataatgcctctaagaaacta |
40665366 |
T |
|
| Q |
224 |
aagtttaaagattagacaaagctagcaaaaccaagtgatgaaaggtgggaactcacgtttcaagaatgcatcaaagagatttccagtgagaccttcaatt |
323 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
40665365 |
aagtttaaagattagacaaagctagcaaaaccaagtgatgaaaggtgggaactcacgtttcaagaaagcatcaaagagatttccagtgagaccttcaatt |
40665266 |
T |
|
| Q |
324 |
gtatcatcaataggcagaatgtgcacacgtttaccatacttgacatcaggacactgatgcacagacacaacatctccaagccgaactcgcaaattcgacc |
423 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40665265 |
gtatcatcaataggcagaatgtgcacacgtttaccatacttgacatcagtacactgatgcacagacacaacatctccaagccgaactcgcaaattcgacc |
40665166 |
T |
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| Q |
424 |
tcacaactttgttcatcctaatccta |
449 |
Q |
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| T |
40665165 |
tcacaactttgttcatcctaatccta |
40665140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 238 - 449
Target Start/End: Original strand, 40725193 - 40725404
Alignment:
| Q |
238 |
gacaaagctagcaaaaccaagtgatgaaaggtgggaactcacgtttcaagaatgcatcaaagagatttccagtgagaccttcaattgtatcatcaatagg |
337 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40725193 |
gacaaagctagcaaaaccaagtgatgaaaggtgggaactcacgtttcaagaaagcatcaaagagatttccagtgagaccttcaattgtatcatcaatagg |
40725292 |
T |
|
| Q |
338 |
cagaatgtgcacacgtttaccatacttgacatcaggacactgatgcacagacacaacatctccaagccgaactcgcaaattcgacctcacaactttgttc |
437 |
Q |
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| T |
40725293 |
cagaatgtgcacacgtttaccatacttgacatcagtacactgatgcacagacacaacatctccaagccgaactcgcaaattcgacctcacaactttgttc |
40725392 |
T |
|
| Q |
438 |
atcctaatccta |
449 |
Q |
| |
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|||||||||||| |
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| T |
40725393 |
atcctaatccta |
40725404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 26 - 179
Target Start/End: Original strand, 40724489 - 40724641
Alignment:
| Q |
26 |
atcagtttcaatgaccttaaactctacacttctcatccctccccgcacaagaaatagatctccttttctgacgggacgataagcttccacgaaatacgct |
125 |
Q |
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|||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |||| |||||| ||| |
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| T |
40724489 |
atcagtttcattgaccttaaattctacacttctcatccctccccgcacaagaaatagatctccttttctgaccggacaataagcctccaagaaataggct |
40724588 |
T |
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| Q |
126 |
gtaaattacatacattaaaaaagttaagacttgtgcaaagattaacatatacat |
179 |
Q |
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|||||||| |||||| ||||||||| ||||||||||| ||| || |||||||| |
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| T |
40724589 |
gtaaattagatacatcaaaaaagtt-agacttgtgcagagacaaaaatatacat |
40724641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 273 - 405
Target Start/End: Complemental strand, 109551 - 109419
Alignment:
| Q |
273 |
aactcacgtttcaagaatgcatcaaagagatttccagtgagaccttcaattgtatcatcaataggcagaatgtgcacacgtttaccatacttgacatcag |
372 |
Q |
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||||||||||| ||| |||||||||||||||| ||||| | |||||||| |||||||| | || |||||||| || | || ||||| |||||||||| |
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| T |
109551 |
aactcacgttttaagtatgcatcaaagagattcccagtaactccttcaatagtatcatcgacgggaagaatgtgaactctctttccatatttgacatcag |
109452 |
T |
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| Q |
373 |
gacactgatgcacagacacaacatctccaagcc |
405 |
Q |
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||| |||||||| || |||||||||||||||| |
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| T |
109451 |
cacattgatgcaccgaaacaacatctccaagcc |
109419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 273 - 405
Target Start/End: Original strand, 41093745 - 41093877
Alignment:
| Q |
273 |
aactcacgtttcaagaatgcatcaaagagatttccagtgagaccttcaattgtatcatcaataggcagaatgtgcacacgtttaccatacttgacatcag |
372 |
Q |
| |
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||||||||||| ||| |||||||||||||||| ||||| | |||||||| |||||||| | || |||||||| || | || ||||| |||||||||| |
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| T |
41093745 |
aactcacgttttaagtatgcatcaaagagattcccagtaactccttcaatagtatcatcgacgggaagaatgtgaactctctttccatatttgacatcag |
41093844 |
T |
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| Q |
373 |
gacactgatgcacagacacaacatctccaagcc |
405 |
Q |
| |
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||| |||||||| || |||||||||||||||| |
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| T |
41093845 |
cacattgatgcaccgaaacaacatctccaagcc |
41093877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 273 - 405
Target Start/End: Complemental strand, 27976174 - 27976042
Alignment:
| Q |
273 |
aactcacgtttcaagaatgcatcaaagagatttccagtgagaccttcaattgtatcatcaataggcagaatgtgcacacgtttaccatacttgacatcag |
372 |
Q |
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|||||||| || ||| | |||||||| ||||| ||||| | |||||||| |||||||||| ||| ||||| || || || || ||||| |||||||||| |
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| T |
27976174 |
aactcacgctttaagtaagcatcaaatagattcccagtaaccccttcaatagtatcatcaacaggaagaatatgaactcgctttccatatttgacatcag |
27976075 |
T |
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| Q |
373 |
gacactgatgcacagacacaacatctccaagcc |
405 |
Q |
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|||| ||||| ||||| |||||||| ||||||| |
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| T |
27976074 |
gacattgatgaacagaaacaacatcaccaagcc |
27976042 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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