View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0565_low_2 (Length: 380)
Name: NF0565_low_2
Description: NF0565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0565_low_2 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 81 - 352
Target Start/End: Original strand, 32888119 - 32888390
Alignment:
| Q |
81 |
gcgatctccctgcaaaattaaacatgcactggtcctaataacggtgacaaatattcccaccaataaatatcctataaggtaaaaccaaaatacctcaagc |
180 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
32888119 |
gcgatctccctgcaaaattaaacatgcactggtcctaataacggtgacaaatattcccaccaataaatatcctataaggtaaaaccaaaatacctcgagc |
32888218 |
T |
|
| Q |
181 |
aatgaatactttatatatgaagttttatttacaagaataacatatgaagttgggttctttaattttacaagttagaaaattgttccttattattatttta |
280 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32888219 |
aatgaatactttatatatgaagttttatttacaagaataacatatgaagttgtgttctttaattttacaagttagaaaattgttccttattattatttta |
32888318 |
T |
|
| Q |
281 |
catcttgttacgtggatagccattggattccactttccagcttgtcctttcctcttacttagagtaacaact |
352 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32888319 |
catcttgttacgtggatagccattggtttccactttccagcttgtcctttcctcttacttagagtaacaact |
32888390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University