View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0566_high_2 (Length: 270)
Name: NF0566_high_2
Description: NF0566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0566_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 147; Significance: 1e-77; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 94 - 260
Target Start/End: Complemental strand, 26881250 - 26881084
Alignment:
| Q |
94 |
tgtgttcttctcttgttccctaattcccgcctggttgcttcctcgattggaacataaactcctattaaaacaacctcctccaccaaaaggagaccggctt |
193 |
Q |
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| T |
26881250 |
tgtgttcttctcttgttccgtaattcccgcctcgttgcttcctcgattagaacataaactcctattaaaacaacctcctcgaccaaaaggagaccggctt |
26881151 |
T |
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| Q |
194 |
tcaccatttctctaagcatcatggccttgggaacaacttcattttggtgagtccacattcctctctg |
260 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26881150 |
tcaccatttctctaagtatcatggccttgggaacaacttcattttggtgagtccacattcctctctg |
26881084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 3 - 39
Target Start/End: Complemental strand, 26881291 - 26881255
Alignment:
| Q |
3 |
ttcttgcatcttgattagttttacaatttataaccta |
39 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
26881291 |
ttcttgcatcttgattagttttacaatttataaccta |
26881255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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