View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0566_low_10 (Length: 251)
Name: NF0566_low_10
Description: NF0566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0566_low_10 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 201; Significance: 1e-110; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 15 - 251
Target Start/End: Complemental strand, 39871334 - 39871095
Alignment:
| Q |
15 |
aatacatgacggaatttggacacatgtgtcattgcttgggtttctatcgcatagtaaaagctctt---attgaattctctgaaatcattttatccatnnn |
111 |
Q |
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| T |
39871334 |
aatacatgacggaatttggacacatgtgtcattgcttgggtttctatcgcatagtaaaagctcttcttattgaattctctgaaatcattttatccataaa |
39871235 |
T |
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| Q |
112 |
nnnnttggtgcaaagcggcatctatcagaaaacaatgagttcttcaatgatgaaggcatttttcccctccctctttaaataagtatgaacatgacacaca |
211 |
Q |
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| T |
39871234 |
aaaattggtgcaaagcggcatctatcagaaaacaatgagttcttcgatgatgaaggcatttttcccctccctctttaaataagtatgaacatgacacaca |
39871135 |
T |
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| Q |
212 |
tacaagagatatagaacatataaaacttcacaaacctcta |
251 |
Q |
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| T |
39871134 |
tacaagagatatagaacatataaaacttcacaaacctcta |
39871095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 15 - 251
Target Start/End: Complemental strand, 43836387 - 43836137
Alignment:
| Q |
15 |
aatacatgacggaatttggacacatgtgtcattgcttgggtttctatcgcatagtaaaa-gctctt---attgaattctctgaaat------------ca |
98 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |||||| |||||||||| |||||| || |
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| T |
43836387 |
aatacatgacggaatttggacacatgtgtcattgcttgggtttctatcacatagcaaaatgctcttcttattgaattctgtgaaatagtaaagtctatca |
43836288 |
T |
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| Q |
99 |
ttttatccatnnnnnnnttggtgcaaagcggcatctatcagaaaacaatgagttcttcaatgatgaaggcatttttcccctccctctttaaataagtatg |
198 |
Q |
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| T |
43836287 |
ttttatccataaaaaaattagtgcaaattggcattttttagaaaacgatgagttcttcaatgatgaaggcatttttcccctccctctttaaataagtatg |
43836188 |
T |
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| Q |
199 |
aacatgacacacatacaagagatatagaacatataaaacttcacaaacctcta |
251 |
Q |
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| T |
43836187 |
aacatga--cacataaaagagatatagaagagataaaacttcacaaacctcta |
43836137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 52 - 96
Target Start/End: Complemental strand, 43836451 - 43836406
Alignment:
| Q |
52 |
gggtttctatcgcatagtaaaa-gctcttattgaattctctgaaat |
96 |
Q |
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| T |
43836451 |
gggtttctttcgcatagtaaaatgctcttattgaattctttgaaat |
43836406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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