View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0566_low_2 (Length: 617)

Name: NF0566_low_2
Description: NF0566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0566_low_2
NF0566_low_2
[»] chr4 (48 HSPs)
chr4 (30-611)||(27430655-27431232)
chr4 (36-223)||(27444685-27444872)
chr4 (30-175)||(27554365-27554509)
chr4 (36-152)||(27526074-27526190)
chr4 (36-136)||(27505680-27505780)
chr4 (36-144)||(27523373-27523481)
chr4 (30-142)||(27557545-27557657)
chr4 (39-150)||(27501382-27501493)
chr4 (36-143)||(27516580-27516687)
chr4 (30-144)||(27487039-27487153)
chr4 (48-144)||(27479975-27480071)
chr4 (42-150)||(27498483-27498591)
chr4 (42-136)||(27502113-27502207)
chr4 (42-152)||(27513738-27513848)
chr4 (63-152)||(27473981-27474070)
chr4 (63-152)||(27466910-27466999)
chr4 (30-114)||(27503978-27504062)
chr4 (63-130)||(27460567-27460634)
chr4 (31-110)||(27490017-27490096)
chr4 (256-399)||(27444508-27444642)
chr4 (63-144)||(27476776-27476857)
chr4 (70-167)||(27507760-27507857)
chr4 (30-114)||(27468327-27468411)
chr4 (36-136)||(27469522-27469622)
chr4 (30-114)||(27524580-27524664)
chr4 (30-113)||(27475580-27475663)
chr4 (36-167)||(27502754-27502885)
chr4 (30-109)||(27508908-27508987)
chr4 (30-121)||(27514947-27515038)
chr4 (433-540)||(27557966-27558073)
chr4 (30-115)||(27411455-27411540)
chr4 (30-131)||(27567311-27567412)
chr4 (39-152)||(27571688-27571801)
chr4 (30-121)||(27414297-27414388)
chr4 (39-114)||(27497322-27497397)
chr4 (36-131)||(27500321-27500416)
chr4 (72-131)||(27559223-27559282)
chr4 (39-114)||(27563346-27563421)
chr4 (39-121)||(27585753-27585835)
chr4 (30-131)||(27556362-27556463)
chr4 (39-131)||(27419054-27419146)
chr4 (30-121)||(27415677-27415768)
chr4 (74-121)||(27421924-27421971)
chr4 (30-68)||(27423278-27423316)
chr4 (30-115)||(27424513-27424598)
chr4 (63-127)||(17970388-17970452)
chr4 (38-114)||(27412728-27412804)
chr4 (30-114)||(27570049-27570133)
[»] chr3 (12 HSPs)
chr3 (36-144)||(38028736-38028844)
chr3 (36-144)||(38036763-38036871)
chr3 (36-144)||(38040051-38040159)
chr3 (30-145)||(55084842-55084957)
chr3 (36-145)||(50910022-50910131)
chr3 (36-145)||(50904761-50904870)
chr3 (36-145)||(38033744-38033857)
chr3 (36-130)||(48840696-48840789)
chr3 (36-130)||(50911853-50911947)
chr3 (39-114)||(38043968-38044043)
chr3 (51-145)||(38024844-38024938)
chr3 (51-145)||(38031296-38031390)
[»] chr8 (2 HSPs)
chr8 (36-144)||(21604724-21604832)
chr8 (39-130)||(21634608-21634699)
[»] chr5 (2 HSPs)
chr5 (57-144)||(1759335-1759422)
chr5 (34-150)||(1754206-1754321)
[»] chr2 (1 HSPs)
chr2 (63-127)||(3073658-3073722)


Alignment Details
Target: chr4 (Bit Score: 430; Significance: 0; HSPs: 48)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 30 - 611
Target Start/End: Complemental strand, 27431232 - 27430655
Alignment:
Q  30 caaccgtcatttcaagaattgttgaatcaagccgaggaacaatttggatatgaccatccaacaggtggtctcacaattccttgcagagaagacgttttct 129  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  27431232 caaccgtcatttcaagaattgttgaatcaagccgaggaacaatttggatatgaccatccaaccggtggtctcacaattccttgcagagaagacgttttct 27431133  T
Q  130 taaatattacttctcgtttgaatctgtgctaacatcttcagaagaaggaaatgaaatagattatttgaggaaaaattgtacagcaggcacttacttagtc 229  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  27431132 taaatattacttctcgtttgaatctgtgctaacatcttcagaagaaggaactgaaatagattatttgaggaaaaattgtacagcaggcacttacttagtc 27431033  T
Q  230 taccttatgtaaatgnnnnnnnnnnntagaaaaacaactgagtcaggtgattatatataaacaaagagattatgacttgcttaggaaacttttcagttaa 329  Q
    |||||||| ||||||           |||||||||||| ||||||||| ||||||    |||| ||||||||||||||||||||||||||||||||||||    
T  27431032 taccttatttaaatgaagaaaaaaaatagaaaaacaaccgagtcaggttattata----aacagagagattatgacttgcttaggaaacttttcagttaa 27430937  T
Q  330 tttgtattgcaaattaaacttatacgcagaaatataatacgaagagacttatttgacttgcatatgcttagnnnnnnncctattccataattcacgnnnn 429  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||        
T  27430936 tttgtattgcaaattaaacttatacgcagaaatataatacgaagagacttatttgacttgcatatgcttagtttttttcctattccataattcacgaaaa 27430837  T
Q  430 nnncaaattttactttactatgaacgatgaaaatatgttttatttcaaaaccatctgggagtttctactggttttggatcagtaattgatttgttggatt 529  Q
       |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||    
T  27430836 aaacaaattttactttactatgaacgacgaaaatatgttttatttcaaaaccatctgggagtctctactggttttggatcagtaatagatttgttggatt 27430737  T
Q  530 gttaagtaacctttacataatggcaatcttaggactcagtatatatttattaaaagaactttgttgctttgatattattgga 611  Q
    ||||||||||||||||  ||| |||||||||||||||||||||||||||||||||||||| |||||||||||| || |||||    
T  27430736 gttaagtaacctttacgcaatcgcaatcttaggactcagtatatatttattaaaagaactctgttgctttgattttgttgga 27430655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 36 - 223
Target Start/End: Complemental strand, 27444872 - 27444685
Alignment:
Q  36 tcatttcaagaattgttgaatcaagccgaggaacaatttggatatgaccatccaacaggtggtctcacaattccttgcagagaagacgttttcttaaata 135  Q
    |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||| |||    
T  27444872 tcatttcaagaattattgaatcaagccgaggaacaattcggatatgaccatccaatgggtggtctcacaattccttgcagagaagacgttttcttagata 27444773  T
Q  136 ttacttctcgtttgaatctgtgctaacatcttcagaagaaggaaatgaaatagattatttgaggaaaaattgtacagcaggcacttac 223  Q
    |||||||||||||||||||||||||| ||||||||| ||||||| ||| ||||||||||| ||| |||||||||||| ||||||||||    
T  27444772 ttacttctcgtttgaatctgtgctaatatcttcagatgaaggaactgacatagattattttaggcaaaattgtacagaaggcacttac 27444685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 30 - 175
Target Start/End: Original strand, 27554365 - 27554509
Alignment:
Q  30 caaccgtcatttcaagaattgttgaatcaagccgaggaacaatttggatatgaccatccaacaggtggtctcacaattccttgcagagaagacgttttct 129  Q
    ||||| || |||||||||||| |||||||||| |||||||||||||||||||| |||||||| ||| |||||||||||||||| ||||||||||||||||    
T  27554365 caaccatcgtttcaagaattgctgaatcaagctgaggaacaatttggatatgatcatccaacgggtagtctcacaattccttgtagagaagacgttttct 27554464  T
Q  130 taaatattacttctcgtttgaatctgtgctaacatcttcagaagaa 175  Q
    || ||||||||||||||||||||||||||||||  |||||||||||    
T  27554465 tagatattacttctcgtttgaatctgtgctaac-ccttcagaagaa 27554509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 36 - 152
Target Start/End: Complemental strand, 27526190 - 27526074
Alignment:
Q  36 tcatttcaagaattgttgaatcaagccgaggaacaatttggatatgaccatccaacaggtggtctcacaattccttgcagagaagacgttttcttaaata 135  Q
    ||||| |||||||||||||  ||||| ||||||||||||| |||||| |||||||| ||||||||||| ||||||||||||||||||||||||||| | |    
T  27526190 tcattccaagaattgttgagccaagctgaggaacaatttgaatatgatcatccaacgggtggtctcactattccttgcagagaagacgttttcttagaga 27526091  T
Q  136 ttacttctcgtttgaat 152  Q
    | |||||||||||||||    
T  27526090 tcacttctcgtttgaat 27526074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 36 - 136
Target Start/End: Complemental strand, 27505780 - 27505680
Alignment:
Q  36 tcatttcaagaattgttgaatcaagccgaggaacaatttggatatgaccatccaacaggtggtctcacaattccttgcagagaagacgttttcttaaata 135  Q
    ||||| |||||||||||||| ||||| ||||||||||||| ||||||||||||||  ||||||||||| |||||||||||||||||  |||||||| |||    
T  27505780 tcattccaagaattgttgaaccaagctgaggaacaatttgaatatgaccatccaatgggtggtctcactattccttgcagagaagagattttcttagata 27505681  T
Q  136 t 136  Q
    |    
T  27505680 t 27505680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 36 - 144
Target Start/End: Complemental strand, 27523481 - 27523373
Alignment:
Q  36 tcatttcaagaattgttgaatcaagccgaggaacaatttggatatgaccatccaacaggtggtctcacaattccttgcagagaagacgttttcttaaata 135  Q
    ||||| |||||||||||||   |||||||||||||||||| ||||||||||||||  |||||||| || |||||||||| ||||||| |||||||| |||    
T  27523481 tcattccaagaattgttgagcgaagccgaggaacaatttgaatatgaccatccaatgggtggtctaactattccttgcaaagaagacattttcttagata 27523382  T
Q  136 ttacttctc 144  Q
    |||||||||    
T  27523381 ttacttctc 27523373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 30 - 142
Target Start/End: Original strand, 27557545 - 27557657
Alignment:
Q  30 caaccgtcatttcaagaattgttgaatcaagccgaggaacaatttggatatgaccatccaacaggtggtctcacaattccttgcagagaagacgttttct 129  Q
    ||||| ||||||||||||||| |||||||||| ||||||||||||| |||||  |||||||  ||||||||||| ||||| ||||||||||| |||||||    
T  27557545 caaccatcatttcaagaattgctgaatcaagctgaggaacaatttgaatatgttcatccaatgggtggtctcactattccatgcagagaagatgttttct 27557644  T
Q  130 taaatattacttc 142  Q
    || |||| |||||    
T  27557645 tagatatcacttc 27557657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 39 - 150
Target Start/End: Original strand, 27501382 - 27501493
Alignment:
Q  39 tttcaagaattgttgaatcaagccgaggaacaatttggatatgaccatccaacaggtggtctcacaattccttgcagagaagacgttttcttaaatatta 138  Q
    |||||||| |||||||| ||||||||||||||||||| ||| || |||||||| ||||||||||| |||||||| ||||||||| | |||||| |||| |    
T  27501382 tttcaagacttgttgaaccaagccgaggaacaatttgaatacgatcatccaacgggtggtctcactattccttgtagagaagacatgttcttagatatca 27501481  T
Q  139 cttctcgtttga 150  Q
    ||||| ||||||    
T  27501482 cttcttgtttga 27501493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 36 - 143
Target Start/End: Complemental strand, 27516687 - 27516580
Alignment:
Q  36 tcatttcaagaattgttgaatcaagccgaggaacaatttggatatgaccatccaacaggtggtctcacaattccttgcagagaagacgttttcttaaata 135  Q
    ||||| |||||||||||||| ||||| ||||||||||||| ||||||||||||||  || |||||||| |||||||||| |||||| ||||||||| |||    
T  27516687 tcattccaagaattgttgaaccaagctgaggaacaatttgaatatgaccatccaatggggggtctcactattccttgcaaagaagaagttttcttagata 27516588  T
Q  136 ttacttct 143  Q
    | ||||||    
T  27516587 tcacttct 27516580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 30 - 144
Target Start/End: Original strand, 27487039 - 27487153
Alignment:
Q  30 caaccgtcatttcaagaattgttgaatcaagccgaggaacaatttggatatgaccatccaacaggtggtctcacaattccttgcagagaagacgttttct 129  Q
    ||||| || ||||||||||||||||| ||||| || |||||||||| |||||| |||||||  |||||||| || |||||||||| ||||||| ||||||    
T  27487039 caaccatcgtttcaagaattgttgaaccaagctgaagaacaatttgaatatgatcatccaatgggtggtcttactattccttgcaaagaagacattttct 27487138  T
Q  130 taaatattacttctc 144  Q
    || ||||||||||||    
T  27487139 tagatattacttctc 27487153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 48 - 144
Target Start/End: Original strand, 27479975 - 27480071
Alignment:
Q  48 ttgttgaatcaagccgaggaacaatttggatatgaccatccaacaggtggtctcacaattccttgcagagaagacgttttcttaaatattacttctc 144  Q
    |||||||| ||||| ||||||||||||| |||||| |||||||  ||||||||||| |||||||||||||||||| |||||||| |||||| |||||    
T  27479975 ttgttgaaccaagctgaggaacaatttgaatatgatcatccaatgggtggtctcaccattccttgcagagaagacattttcttagatattaattctc 27480071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 42 - 150
Target Start/End: Original strand, 27498483 - 27498591
Alignment:
Q  42 caagaattgttgaatcaagccgaggaacaatttggatatgaccatccaacaggtggtctcacaattccttgcagagaagacgttttcttaaatattactt 141  Q
    ||||| |||||||| ||||||||||||||||| | |||||| |||||||  ||||||||||| ||||||||| |||||||| | |||||| |||| ||||    
T  27498483 caagacttgttgaaccaagccgaggaacaattcgaatatgatcatccaatgggtggtctcactattccttgcggagaagacatgttcttagatatcactt 27498582  T
Q  142 ctcgtttga 150  Q
    |||||||||    
T  27498583 ctcgtttga 27498591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 42 - 136
Target Start/End: Complemental strand, 27502207 - 27502113
Alignment:
Q  42 caagaattgttgaatcaagccgaggaacaatttggatatgaccatccaacaggtggtctcacaattccttgcagagaagacgttttcttaaatat 136  Q
    |||||||||||||| ||||| ||||||||||||| |||||| |||||||  |||||||| || |||||||||||||||||| |||||||| ||||    
T  27502207 caagaattgttgaaccaagctgaggaacaatttgaatatgatcatccaatgggtggtctaactattccttgcagagaagacattttcttagatat 27502113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 42 - 152
Target Start/End: Complemental strand, 27513848 - 27513738
Alignment:
Q  42 caagaattgttgaatcaagccgaggaacaatttggatatgaccatccaacaggtggtctcacaattccttgcagagaagacgttttcttaaatattactt 141  Q
    |||||||||||||| ||||| || ||||||| || |||||| |||||||  ||||||||||| ||||||||||||||||| || |||||| |||| ||||    
T  27513848 caagaattgttgaaccaagctgaagaacaatatgaatatgatcatccaatgggtggtctcactattccttgcagagaagaagtattcttagatatcactt 27513749  T
Q  142 ctcgtttgaat 152  Q
    |||| ||||||    
T  27513748 ctcgcttgaat 27513738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 63 - 152
Target Start/End: Original strand, 27473981 - 27474070
Alignment:
Q  63 gaggaacaatttggatatgaccatccaacaggtggtctcacaattccttgcagagaagacgttttcttaaatattacttctcgtttgaat 152  Q
    ||||||||||||| |||||| |||||||  ||||||||||| ||||||||| ||||||||||||||||| | || |||||||| ||||||    
T  27473981 gaggaacaatttgaatatgatcatccaatgggtggtctcaccattccttgcggagaagacgttttcttagacatcacttctcgcttgaat 27474070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 63 - 152
Target Start/End: Original strand, 27466910 - 27466999
Alignment:
Q  63 gaggaacaatttggatatgaccatccaacaggtggtctcacaattccttgcagagaagacgttttcttaaatattacttctcgtttgaat 152  Q
    ||||||||||||| |||||| |||||||  ||||||||||| ||||||||||||||||| ||||||||| | || |||||| | ||||||    
T  27466910 gaggaacaatttgaatatgatcatccaatgggtggtctcactattccttgcagagaagaagttttcttagacatcacttctagcttgaat 27466999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 30 - 114
Target Start/End: Original strand, 27503978 - 27504062
Alignment:
Q  30 caaccgtcatttcaagaattgttgaatcaagccgaggaacaatttggatatgaccatccaacaggtggtctcacaattccttgca 114  Q
    ||||| ||||||||||| ||||||| ||||||||||||| | ||||||||||| |||||||  ||||| ||||| ||||||||||    
T  27503978 caaccttcatttcaagacttgttgagtcaagccgaggaagagtttggatatgatcatccaatgggtggcctcaccattccttgca 27504062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 63 - 130
Target Start/End: Original strand, 27460567 - 27460634
Alignment:
Q  63 gaggaacaatttggatatgaccatccaacaggtggtctcacaattccttgcagagaagacgttttctt 130  Q
    ||||||||||||| |||||| |||||||  ||||||||||| |||||||||||||||||| |||||||    
T  27460567 gaggaacaatttgaatatgatcatccaatgggtggtctcaccattccttgcagagaagacattttctt 27460634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 31 - 110
Target Start/End: Original strand, 27490017 - 27490096
Alignment:
Q  31 aaccgtcatttcaagaattgttgaatcaagccgaggaacaatttggatatgaccatccaacaggtggtctcacaattcct 110  Q
    |||| ||||||||||| ||||||||||||||||||||| | ||||||||||| |||||||  ||||| ||||| ||||||    
T  27490017 aaccatcatttcaagatttgttgaatcaagccgaggaagagtttggatatgatcatccaatgggtggcctcaccattcct 27490096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 256 - 399
Target Start/End: Complemental strand, 27444642 - 27444508
Alignment:
Q  256 tagaaaaacaactgagtcaggtgattatatataaacaaagagattatgacttgcttaggaaacttttcagttaatttgtattgcaaattaaacttatacg 355  Q
    ||||||||||||||||| || |||||||     |||||||||||||||||||  ||| |||| ||||||  ||| ||||||| |     ||||||||| |    
T  27444642 tagaaaaacaactgagtgagatgattatg----aacaaagagattatgacttatttacgaaaattttcaactaagttgtattac-----aaacttatatg 27444552  T
Q  356 cagaaatataatacgaagagacttatttgacttgcatatgctta 399  Q
    |||||||||||||| ||||||| |||||| || |||||||||||    
T  27444551 cagaaatataatacaaagagacatatttgtctggcatatgctta 27444508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 63 - 144
Target Start/End: Original strand, 27476776 - 27476857
Alignment:
Q  63 gaggaacaatttggatatgaccatccaacaggtggtctcacaattccttgcagagaagacgttttcttaaatattacttctc 144  Q
    ||||||||||||| |||||| |||||||  |||||||| || |||||||||||||||||| |||||||  ||||||| ||||    
T  27476776 gaggaacaatttgaatatgatcatccaatgggtggtctaactattccttgcagagaagacattttcttggatattacctctc 27476857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 70 - 167
Target Start/End: Complemental strand, 27507857 - 27507760
Alignment:
Q  70 aatttggatatgaccatccaacaggtggtctcacaattccttgcagagaagacgttttcttaaatattacttctcgtttgaatctgtgctaacatctt 167  Q
    |||||||||||||||||||||  |||||||| |||||||||||   ||||||  |||||||| |||| |||||||| |||| |  |||||||||||||    
T  27507857 aatttggatatgaccatccaatgggtggtcttacaattccttgtgaagaagatcttttcttagatatcacttctcgcttgagtaggtgctaacatctt 27507760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 30 - 114
Target Start/End: Complemental strand, 27468411 - 27468327
Alignment:
Q  30 caaccgtcatttcaagaattgttgaatcaagccgaggaacaatttggatatgaccatccaacaggtggtctcacaattccttgca 114  Q
    ||||| ||||||||||| ||||||| |||| |||||||| ||||||||||||| ||||| |  ||||| ||||| ||||||||||    
T  27468411 caaccttcatttcaagacttgttgagtcaatccgaggaagaatttggatatgatcatcccatgggtggcctcaccattccttgca 27468327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 36 - 136
Target Start/End: Original strand, 27469522 - 27469622
Alignment:
Q  36 tcatttcaagaattgttgaatcaagccgaggaacaatttggatatgaccatccaacaggtggtctcacaattccttgcagagaagacgttttcttaaata 135  Q
    ||||| |||||| ||||||  ||||| || |||||||||| |||||| |||||||  |||||||| || |||||||||||||||||  |||||||| |||    
T  27469522 tcattacaagaactgttgagccaagctgaagaacaatttgaatatgaacatccaatgggtggtctaactattccttgcagagaagaaattttcttagata 27469621  T
Q  136 t 136  Q
    |    
T  27469622 t 27469622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 30 - 114
Target Start/End: Original strand, 27524580 - 27524664
Alignment:
Q  30 caaccgtcatttcaagaattgttgaatcaagccgaggaacaatttggatatgaccatccaacaggtggtctcacaattccttgca 114  Q
    ||||| ||||||||||| |||||||||||||| |||||| | ||||||||||| |||||||  ||||| ||||| ||||| ||||    
T  27524580 caaccttcatttcaagacttgttgaatcaagctgaggaagagtttggatatgatcatccaatgggtggcctcaccattccgtgca 27524664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 30 - 113
Target Start/End: Complemental strand, 27475663 - 27475580
Alignment:
Q  30 caaccgtcatttcaagaattgttgaatcaagccgaggaacaatttggatatgaccatccaacaggtggtctcacaattccttgc 113  Q
    ||||| ||||||||||| ||||||| ||||||||||||| | ||||||||||| ||||| |  ||||| ||||| |||||||||    
T  27475663 caaccttcatttcaagacttgttgagtcaagccgaggaagagtttggatatgatcatcccatgggtggcctcaccattccttgc 27475580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 36 - 167
Target Start/End: Complemental strand, 27502885 - 27502754
Alignment:
Q  36 tcatttcaagaattgttgaatcaagccgaggaacaatttggatatgaccatccaacaggtggtctcacaattccttgcagagaagacgttttcttaaata 135  Q
    ||||||||||| ||| |||  ||||| | |||| |||||||||||||||||||||  |||||||| || ||||||||   ||||||  ||||| || |||    
T  27502885 tcatttcaagacttgctgagccaagctgtggaagaatttggatatgaccatccaatgggtggtcttactattccttgtgaagaagattttttcgtagata 27502786  T
Q  136 ttacttctcgtttgaatctgtgctaacatctt 167  Q
    | |||||||| |||| |  |||||||||||||    
T  27502785 tcacttctcgcttgagtaggtgctaacatctt 27502754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 30 - 109
Target Start/End: Original strand, 27508908 - 27508987
Alignment:
Q  30 caaccgtcatttcaagaattgttgaatcaagccgaggaacaatttggatatgaccatccaacaggtggtctcacaattcc 109  Q
    ||||| ||||||||||| ||||||||||| || |||||| | ||||||||||| |||||||| ||||| ||||| |||||    
T  27508908 caaccttcatttcaagacttgttgaatcaggctgaggaagagtttggatatgatcatccaacgggtggcctcaccattcc 27508987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 30 - 121
Target Start/End: Original strand, 27514947 - 27515038
Alignment:
Q  30 caaccgtcatttcaagaattgttgaatcaagccgaggaacaatttggatatgaccatccaacaggtggtctcacaattccttgcagagaaga 121  Q
    ||||| ||||||||||| ||||||| |||| |||||||| ||||||||||||| ||||| |  ||||| ||||| |||||||| | ||||||    
T  27514947 caaccttcatttcaagacttgttgagtcaatccgaggaagaatttggatatgatcatcccatgggtggcctcaccattccttgtacagaaga 27515038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 433 - 540
Target Start/End: Original strand, 27557966 - 27558073
Alignment:
Q  433 caaattttactttactatgaacgatgaaaatatgttttatttcaaaaccatctgggagtttctactggttttggatcagtaattgatttgttggattgtt 532  Q
    |||||||||| ||| |||||| || | ||||||||||||||||||||||| |||| | | | ||||| |||||| |||||||| | |||| |||| ||||    
T  27557966 caaattttaccttaatatgaaagaaggaaatatgttttatttcaaaaccagctggtaatctatactgtttttggttcagtaatagttttgctggaatgtt 27558065  T
Q  533 aagtaacc 540  Q
    || |||||    
T  27558066 aattaacc 27558073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 30 - 115
Target Start/End: Complemental strand, 27411540 - 27411455
Alignment:
Q  30 caaccgtcatttcaagaattgttgaatcaagccgaggaacaatttggatatgaccatccaacaggtggtctcacaattccttgcag 115  Q
    ||||| || |||||||||||  | |||||||| || ||| ||||||||||||| ||||| |  |||||||||||||||||||||||    
T  27411540 caaccatcgtttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgcag 27411455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 30 - 131
Target Start/End: Original strand, 27567311 - 27567412
Alignment:
Q  30 caaccgtcatttcaagaattgttgaatcaagccgaggaacaatttggatatgaccatccaacaggtggtctcacaattccttgcagagaagacgttttct 129  Q
    ||||| || |||||||||||  | |||||| | || ||| ||||||| ||||| |||||||  ||||||||||||||||||||||| ||||| | |||||    
T  27567311 caaccatcgtttcaagaattactaaatcaaacagaagaagaatttggttatgatcatccaatgggtggtctcacaattccttgcagcgaagatgctttct 27567410  T
Q  130 ta 131  Q
    ||    
T  27567411 ta 27567412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 39 - 152
Target Start/End: Original strand, 27571688 - 27571801
Alignment:
Q  39 tttcaagaattgttgaatcaagccgaggaacaatttggatatgaccatccaacaggtggtctcacaattccttgcagagaagacgttttcttaaatatta 138  Q
    |||||||||||  | |||||| | || ||| ||||||||||||| |||||||  ||||||||||||||||||||| | || || |  ||| ||||| |||    
T  27571688 tttcaagaattactaaatcaatcagaagaagaatttggatatgatcatccaatgggtggtctcacaattccttgcggcgaggatgaattcctaaatctta 27571787  T
Q  139 cttctcgtttgaat 152  Q
    ||||||| ||||||    
T  27571788 cttctcgcttgaat 27571801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 30 - 121
Target Start/End: Complemental strand, 27414388 - 27414297
Alignment:
Q  30 caaccgtcatttcaagaattgttgaatcaagccgaggaacaatttggatatgaccatccaacaggtggtctcacaattccttgcagagaaga 121  Q
    ||||| ||||||||||||||  | |||||| | || ||| ||||||||||||| |||||||  |||||||| |||||||| ||||| |||||    
T  27414388 caaccctcatttcaagaattactaaatcaatcagaagaagaatttggatatgatcatccaatgggtggtcttacaattccgtgcagtgaaga 27414297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 39 - 114
Target Start/End: Complemental strand, 27497397 - 27497322
Alignment:
Q  39 tttcaagaattgttgaatcaagccgaggaacaatttggatatgaccatccaacaggtggtctcacaattccttgca 114  Q
    |||||| | ||||||| |||||| |||||| | ||||||||||| ||||| |||||||| ||||| ||||||||||    
T  27497397 tttcaatatttgttgagtcaagctgaggaagagtttggatatgatcatcccacaggtggcctcaccattccttgca 27497322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 36 - 131
Target Start/End: Complemental strand, 27500416 - 27500321
Alignment:
Q  36 tcatttcaagaattgttgaatcaagccgaggaacaatttggatatgaccatccaacaggtggtctcacaattccttgcagagaagacgttttctta 131  Q
    ||||| ||||||||| |||  ||| | || ||||| || ||||||||||||||||  |||||  |||| |||||||||||||||||| ||||||||    
T  27500416 tcattccaagaattgctgagccaatctgaagaacagttcggatatgaccatccaatgggtggcatcactattccttgcagagaagaccttttctta 27500321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 72 - 131
Target Start/End: Complemental strand, 27559282 - 27559223
Alignment:
Q  72 tttggatatgaccatccaacaggtggtctcacaattccttgcagagaagacgttttctta 131  Q
    ||||||||||| |||||||  ||||||||||||||||||||||| ||||| | |||||||    
T  27559282 tttggatatgatcatccaatgggtggtctcacaattccttgcagtgaagatgctttctta 27559223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 39 - 114
Target Start/End: Complemental strand, 27563421 - 27563346
Alignment:
Q  39 tttcaagaattgttgaatcaagccgaggaacaatttggatatgaccatccaacaggtggtctcacaattccttgca 114  Q
    |||||||| ||| ||| ||||||||| ||| | ||||||||||| |||||||  ||||| ||||||||||||||||    
T  27563421 tttcaagatttgctgagtcaagccgaagaagagtttggatatgatcatccaatgggtggcctcacaattccttgca 27563346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 39 - 121
Target Start/End: Original strand, 27585753 - 27585835
Alignment:
Q  39 tttcaagaattgttgaatcaagccgaggaacaatttggatatgaccatccaacaggtggtctcacaattccttgcagagaaga 121  Q
    |||||||| ||| ||| ||||||||| ||| | ||||||||||| |||||||  || |||||||| |||||||||| ||||||    
T  27585753 tttcaagatttgatgagtcaagccgaagaagagtttggatatgatcatccaatgggaggtctcaccattccttgcacagaaga 27585835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 30 - 131
Target Start/End: Complemental strand, 27556463 - 27556362
Alignment:
Q  30 caaccgtcatttcaagaattgttgaatcaagccgaggaacaatttggatatgaccatccaacaggtggtctcacaattccttgcagagaagacgttttct 129  Q
    ||||| ||||||||||||||  |  ||||||| || ||| ||||||||||||| ||| | |  ||||||||||||||||| ||||| ||||| | |||||    
T  27556463 caaccttcatttcaagaattactacatcaagcagaagaagaatttggatatgatcattctatgggtggtctcacaattccatgcagtgaagatgctttct 27556364  T
Q  130 ta 131  Q
    ||    
T  27556363 ta 27556362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 39 - 131
Target Start/End: Complemental strand, 27419146 - 27419054
Alignment:
Q  39 tttcaagaattgttgaatcaagccgaggaacaatttggatatgaccatccaacaggtggtctcacaattccttgcagagaagacgttttctta 131  Q
    |||||||||||  | |||||| | || ||| ||||||||||||| |||||||  |||||||| |||||||||||| | ||||| | |||||||    
T  27419146 tttcaagaattactaaatcaatcagaagaagaatttggatatgatcatccaatgggtggtcttacaattccttgcggtgaagatgctttctta 27419054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 121
Target Start/End: Original strand, 27415677 - 27415768
Alignment:
Q  30 caaccgtcatttcaagaattgttgaatcaagccgaggaacaatttggatatgaccatccaacaggtggtctcacaattccttgcagagaaga 121  Q
    ||||| || |||||||| ||||||| |||||| |||||| | ||||||||||| ||| | |  ||||| ||||| |||||||||| ||||||    
T  27415677 caaccatcgtttcaagacttgttgagtcaagctgaggaagagtttggatatgatcattccatgggtggcctcaccattccttgcacagaaga 27415768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 74 - 121
Target Start/End: Complemental strand, 27421971 - 27421924
Alignment:
Q  74 tggatatgaccatccaacaggtggtctcacaattccttgcagagaaga 121  Q
    |||||| || |||||||| ||||||||||||||||||||||| |||||    
T  27421971 tggatacgatcatccaacgggtggtctcacaattccttgcagtgaaga 27421924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 30 - 68
Target Start/End: Original strand, 27423278 - 27423316
Alignment:
Q  30 caaccgtcatttcaagaattgttgaatcaagccgaggaa 68  Q
    ||||| ||||||||||||||||||| |||||||||||||    
T  27423278 caaccttcatttcaagaattgttgagtcaagccgaggaa 27423316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 115
Target Start/End: Complemental strand, 27424598 - 27424513
Alignment:
Q  30 caaccgtcatttcaagaattgttgaatcaagccgaggaacaatttggatatgaccatccaacaggtggtctcacaattccttgcag 115  Q
    ||||| ||||||||||||||| | |||||| | || ||| ||| ||||||||| |||||||  |||||||| || ||||| |||||    
T  27424598 caaccttcatttcaagaattgctaaatcaatctgaagaagaatatggatatgatcatccaatgggtggtcttaccattccgtgcag 27424513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 63 - 127
Target Start/End: Original strand, 17970388 - 17970452
Alignment:
Q  63 gaggaacaatttggatatgaccatccaacaggtggtctcacaattccttgcagagaagacgtttt 127  Q
    |||||| |||| ||||| || |||||||  ||||| |||||||||||||||| |||||| |||||    
T  17970388 gaggaagaattcggatacgatcatccaatgggtggcctcacaattccttgcacagaagatgtttt 17970452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 38 - 114
Target Start/End: Original strand, 27412728 - 27412804
Alignment:
Q  38 atttcaagaattgttgaatcaagccgaggaacaatttggatatgaccatccaacaggtggtctcacaattccttgca 114  Q
    ||||||||| || |||| |||||| || ||| | ||||||||||| |||||||  ||||| ||||| ||||||||||    
T  27412728 atttcaagacttattgagtcaagctgaagaagagtttggatatgatcatccaatgggtggcctcaccattccttgca 27412804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 30 - 114
Target Start/End: Complemental strand, 27570133 - 27570049
Alignment:
Q  30 caaccgtcatttcaagaattgttgaatcaagccgaggaacaatttggatatgaccatccaacaggtggtctcacaattccttgca 114  Q
    ||||| ||||||||||| ||| ||| |||||| |||||| | || |||||||| ||||| |  ||||| ||||| ||||||||||    
T  27570133 caaccttcatttcaagacttgctgagtcaagctgaggaagagttcggatatgatcatcccatgggtggcctcaccattccttgca 27570049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 7e-26; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 36 - 144
Target Start/End: Complemental strand, 38028844 - 38028736
Alignment:
Q  36 tcatttcaagaattgttgaatcaagccgaggaacaatttggatatgaccatccaacaggtggtctcacaattccttgcagagaagacgttttcttaaata 135  Q
    ||||||||| |  |||||| ||||||||||||| |||||||||||||||||||||  || || |||||||||||||||| |||||||||||||||  |||    
T  38028844 tcatttcaaaacctgttgagtcaagccgaggaagaatttggatatgaccatccaatgggcggcctcacaattccttgcacagaagacgttttcttgcata 38028745  T
Q  136 ttacttctc 144  Q
    |||||||||    
T  38028744 ttacttctc 38028736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 36 - 144
Target Start/End: Complemental strand, 38036871 - 38036763
Alignment:
Q  36 tcatttcaagaattgttgaatcaagccgaggaacaatttggatatgaccatccaacaggtggtctcacaattccttgcagagaagacgttttcttaaata 135  Q
    ||||||||| | ||||||| ||||||||||||| |||| ||||||||||||||||  || || |||||||||||||||| |||| ||||||||||  |||    
T  38036871 tcatttcaaaatttgttgagtcaagccgaggaagaattcggatatgaccatccaatgggcggcctcacaattccttgcacagaatacgttttcttgcata 38036772  T
Q  136 ttacttctc 144  Q
    |||||||||    
T  38036771 ttacttctc 38036763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 36 - 144
Target Start/End: Complemental strand, 38040159 - 38040051
Alignment:
Q  36 tcatttcaagaattgttgaatcaagccgaggaacaatttggatatgaccatccaacaggtggtctcacaattccttgcagagaagacgttttcttaaata 135  Q
    ||||||||| |  |||||| ||||||||||||| |||| ||||||||||||||||  || || |||||||||||||||| |||||||||||||||  |||    
T  38040159 tcatttcaaaacctgttgagtcaagccgaggaagaattcggatatgaccatccaatgggcggcctcacaattccttgcacagaagacgttttcttgcata 38040060  T
Q  136 ttacttctc 144  Q
    |||||||||    
T  38040059 ttacttctc 38040051  T

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Target: chr3; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 30 - 145
Target Start/End: Original strand, 55084842 - 55084957
Alignment:
Q  30 caaccgtcatttcaagaattgttgaatcaagccgaggaacaatttggatatgaccatccaacaggtggtctcacaattccttgcagagaagacgttttct 129  Q
    ||||| ||||||||||| ||||||| ||  || |||||| |||||||||| || |||||||  ||||| |||||||||||||||| |||||| |||||||    
T  55084842 caaccatcatttcaagacttgttgagtcgggcggaggaagaatttggatacgatcatccaatgggtggcctcacaattccttgcacagaagatgttttct 55084941  T
Q  130 taaatattacttctcg 145  Q
    |  |||||||||||||    
T  55084942 ttcatattacttctcg 55084957  T

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Target: chr3; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 36 - 145
Target Start/End: Original strand, 50910022 - 50910131
Alignment:
Q  36 tcatttcaagaattgttgaatcaagccgaggaacaatttggatatgaccatccaacaggtggtctcacaattccttgcagagaagacgttttcttaaata 135  Q
    ||||||||| | |||||||||||||  |||||| ||||||||||||| |||||||  ||||| |||||||||||||||| |||||| || |||||  | |    
T  50910022 tcatttcaaaacttgttgaatcaagtggaggaagaatttggatatgatcatccaatgggtggcctcacaattccttgcacagaagatgtcttcttgcaaa 50910121  T
Q  136 ttacttctcg 145  Q
    ||||||||||    
T  50910122 ttacttctcg 50910131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 36 - 145
Target Start/End: Complemental strand, 50904870 - 50904761
Alignment:
Q  36 tcatttcaagaattgttgaatcaagccgaggaacaatttggatatgaccatccaacaggtggtctcacaattccttgcagagaagacgttttcttaaata 135  Q
    ||||||||||| ||||||| || ||| |||||  |||| |||||||| |||||||  ||||| ||||| ||||||||||||||||| ||||| ||  |||    
T  50904870 tcatttcaagacttgttgagtcgagcagaggatgaattcggatatgatcatccaatgggtggcctcaccattccttgcagagaagaggtttttttgcata 50904771  T
Q  136 ttacttctcg 145  Q
    | ||||||||    
T  50904770 tcacttctcg 50904761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 36 - 145
Target Start/End: Complemental strand, 38033857 - 38033744
Alignment:
Q  36 tcatttcaagaattgttgaatcaagccgaggaacaatttggatatgaccatcc----aacaggtggtctcacaattccttgcagagaagacgttttctta 131  Q
    ||||||||| | ||||||| ||||||||||||| |||||||||||||||||||    ||  || ||  |||||||||| |||| |||||| ||||||||     
T  38033857 tcatttcaaaacttgttgagtcaagccgaggaagaatttggatatgaccatccaattaatgggcggcatcacaattccctgcacagaagatgttttcttg 38033758  T
Q  132 aatattacttctcg 145  Q
     |||||||||||||    
T  38033757 catattacttctcg 38033744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 36 - 130
Target Start/End: Complemental strand, 48840789 - 48840696
Alignment:
Q  36 tcatttcaagaattgttgaatcaagccgaggaacaatttggatatgaccatccaacaggtggtctcacaattccttgcagagaagacgttttctt 130  Q
    ||||||||||| ||||||| | |||  ||| || ||||||||||||| |||||||  ||||| |||||||||||||||| |||||| ||||||||    
T  48840789 tcatttcaagacttgttgagt-aagtggagaaagaatttggatatgatcatccaatgggtggcctcacaattccttgcacagaagatgttttctt 48840696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 36 - 130
Target Start/End: Complemental strand, 50911947 - 50911853
Alignment:
Q  36 tcatttcaagaattgttgaatcaagccgaggaacaatttggatatgaccatccaacaggtggtctcacaattccttgcagagaagacgttttctt 130  Q
    ||||||||| | ||||||| |||||| |||||| ||||||||||||| || ||||  ||||| || ||||||||||||| |||||  ||||||||    
T  50911947 tcatttcaaaacttgttgagtcaagcagaggaagaatttggatatgatcacccaatgggtggcctaacaattccttgcacagaaggtgttttctt 50911853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 39 - 114
Target Start/End: Original strand, 38043968 - 38044043
Alignment:
Q  39 tttcaagaattgttgaatcaagccgaggaacaatttggatatgaccatccaacaggtggtctcacaattccttgca 114  Q
    |||||||| ||| ||| |||||| |||||| ||||||||||||| |||||||  || || ||||||||||||||||    
T  38043968 tttcaagacttgctgagtcaagcagaggaagaatttggatatgatcatccaatgggcggcctcacaattccttgca 38044043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 51 - 145
Target Start/End: Complemental strand, 38024938 - 38024844
Alignment:
Q  51 ttgaatcaagccgaggaacaatttggatatgaccatccaacaggtggtctcacaattccttgcagagaagacgttttcttaaatattacttctcg 145  Q
    |||| |||||| |||||| ||||||||||||| || ||||  ||||| ||||| |||||||||| ||||||| ||||| |  | |||||||||||    
T  38024938 ttgagtcaagcagaggaagaatttggatatgatcacccaatgggtggcctcacgattccttgcacagaagacattttcatggaaattacttctcg 38024844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 51 - 145
Target Start/End: Complemental strand, 38031390 - 38031296
Alignment:
Q  51 ttgaatcaagccgaggaacaatttggatatgaccatccaacaggtggtctcacaattccttgcagagaagacgttttcttaaatattacttctcg 145  Q
    |||| |||||| |||||| ||||||||||||| || ||||  ||||| ||||| |||||||||| ||||||| ||||| |  | |||||||||||    
T  38031390 ttgagtcaagcagaggaagaatttggatatgatcacccaatgggtggcctcacgattccttgcacagaagacattttcatggaaattacttctcg 38031296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 4e-21; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 36 - 144
Target Start/End: Complemental strand, 21604832 - 21604724
Alignment:
Q  36 tcatttcaagaattgttgaatcaagccgaggaacaatttggatatgaccatccaacaggtggtctcacaattccttgcagagaagacgttttcttaaata 135  Q
    ||||||||| |  |||||| ||||| ||||||| |||| ||||||||||||||||  || || |||||||||||||||| |||||||||||||||  |||    
T  21604832 tcatttcaaaacatgttgagtcaagacgaggaagaattaggatatgaccatccaatgggcggcctcacaattccttgcacagaagacgttttcttgcata 21604733  T
Q  136 ttacttctc 144  Q
    |||||||||    
T  21604732 ttacttctc 21604724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 39 - 130
Target Start/End: Original strand, 21634608 - 21634699
Alignment:
Q  39 tttcaagaattgttgaatcaagccgaggaacaatttggatatgaccatccaacaggtggtctcacaattccttgcagagaagacgttttctt 130  Q
    |||||||| ||| ||| |||||| |||||| ||||||||||||| |||| ||  || ||  |||||||||||||||  ||||| ||||||||    
T  21634608 tttcaagacttgctgagtcaagcagaggaagaatttggatatgatcatcgaatgggcggcttcacaattccttgcaccgaagatgttttctt 21634699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 57 - 144
Target Start/End: Original strand, 1759335 - 1759422
Alignment:
Q  57 caagccgaggaacaatttggatatgaccatccaacaggtggtctcacaattccttgcagagaagacgttttcttaaatattacttctc 144  Q
    ||||| ||||||||||||| |||  |||||||||  ||||||||||| |||| |||||||||||| ||||||||| |||| |||||||    
T  1759335 caagctgaggaacaatttgaatacaaccatccaatgggtggtctcaccattctttgcagagaagaagttttcttagatatcacttctc 1759422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 34 - 150
Target Start/End: Complemental strand, 1754321 - 1754206
Alignment:
Q  34 cgtcatttcaagaattgttgaatcaagccgaggaacaatttggatatgaccatccaacaggtggtctcacaattccttgcagagaagacgttttcttaaa 133  Q
    ||||||||||| ||||| | ||  || | |||||||| |||| |||||| ||||| |  ||||||||||| |||||||| |||||| || |||||||| |    
T  1754321 cgtcatttcaaaaattgctaaacaaatctgaggaacagtttgaatatgatcatccgatgggtggtctcactattccttgtagagaa-accttttcttaga 1754223  T
Q  134 tattacttctcgtttga 150  Q
    ||| |||||||| ||||    
T  1754222 tatcacttctcgcttga 1754206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 63 - 127
Target Start/End: Original strand, 3073658 - 3073722
Alignment:
Q  63 gaggaacaatttggatatgaccatccaacaggtggtctcacaattccttgcagagaagacgtttt 127  Q
    |||||| |||| ||||| || |||||||  ||||| |||||||||||||||| |||||| |||||    
T  3073658 gaggaagaattcggatacgatcatccaatgggtggcctcacaattccttgcacagaagatgtttt 3073722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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