View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0568_high_14 (Length: 312)
Name: NF0568_high_14
Description: NF0568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0568_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 96; Significance: 4e-47; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 4 - 107
Target Start/End: Original strand, 23668951 - 23669054
Alignment:
| Q |
4 |
catataaacaattatttgaatataggaatagagagtggtgaaggaacaaattggtttctacatgattgagaaatctgcacataaaagtgttgaaagcttg |
103 |
Q |
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| T |
23668951 |
catataaacaattatttgaatataggaacagagagtggtgaaggaacaaattggtttctacatgattgagaaatatgcacataaaagtgttgaaagcttg |
23669050 |
T |
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| Q |
104 |
ctat |
107 |
Q |
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|||| |
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| T |
23669051 |
ctat |
23669054 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 147 - 245
Target Start/End: Original strand, 23669086 - 23669184
Alignment:
| Q |
147 |
ggggaatgagattgaagagggaaaggattggaagcttagtcgtgggagaataagacaaaaaggaaataatcaagtgtagttggtttatagtataatcta |
245 |
Q |
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| T |
23669086 |
ggggaatgagattgaagagggaaatgattggaagcttattcgtgggagaataagacaaaaaggaaataatcaagtgtggttggtttatagtataatcta |
23669184 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 4 - 73
Target Start/End: Complemental strand, 5827087 - 5827018
Alignment:
| Q |
4 |
catataaacaattatttgaatataggaatagagagtggtgaaggaacaaattggtttctacatgattgag |
73 |
Q |
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| T |
5827087 |
catatagacaattatttgaatataacaacacagaatggtgaaagaacaaattggtttctacatgattgag |
5827018 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 91; Significance: 4e-44; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 4 - 110
Target Start/End: Original strand, 9369814 - 9369920
Alignment:
| Q |
4 |
catataaacaattatttgaatataggaatagagagtggtgaaggaacaaattggtttctacatgattgagaaatctgcacataaaagtgttgaaagcttg |
103 |
Q |
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| T |
9369814 |
catataaacaattatttaaatataggaatagagagtggtgaaggaacaaattgatttttacatgattgagaaatatgcacataaaagtgttgaaagcttg |
9369913 |
T |
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| Q |
104 |
ctattgt |
110 |
Q |
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||||||| |
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| T |
9369914 |
ctattgt |
9369920 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 149 - 241
Target Start/End: Original strand, 9369943 - 9370035
Alignment:
| Q |
149 |
ggaatgagattgaagagggaaaggattggaagcttagtcgtgggagaataagacaaaaaggaaataatcaagtgtagttggtttatagtataa |
241 |
Q |
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| T |
9369943 |
ggaatgagattgaagagggaaaggattggaagcttagccgtgggagaataagacaaaaaggtaataatcaaatgtgattggtatataatataa |
9370035 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 87; Significance: 1e-41; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 147 - 245
Target Start/End: Complemental strand, 47817632 - 47817534
Alignment:
| Q |
147 |
ggggaatgagattgaagagggaaaggattggaagcttagtcgtgggagaataagacaaaaaggaaataatcaagtgtagttggtttatagtataatcta |
245 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |
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| T |
47817632 |
ggggaatgagattgaagagggaaaggattggaagcttagccgtgggagaataagacaaaaaggaaataatcaagtgtggttggtttatagtatgatcta |
47817534 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 4 - 110
Target Start/End: Complemental strand, 47817763 - 47817657
Alignment:
| Q |
4 |
catataaacaattatttgaatataggaatagagagtggtgaaggaacaaattggtttctacatgattgagaaatctgcacataaaagtgttgaaagcttg |
103 |
Q |
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|||||||||||||||||||||||||||| | ||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
47817763 |
catataaacaattatttgaatataggaacatagagtggtgaatgaacaaataggtttctacatgattgagaaatctgcacataatagtgttgaaagcttg |
47817664 |
T |
|
| Q |
104 |
ctattgt |
110 |
Q |
| |
|
||||||| |
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| T |
47817663 |
ctattgt |
47817657 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 15 - 106
Target Start/End: Original strand, 26049311 - 26049402
Alignment:
| Q |
15 |
ttatttgaatataggaatagagagtggtgaaggaacaaattggtttctacatgattgagaaatctgcacataaaagtgttgaaagcttgcta |
106 |
Q |
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||||||||||||| || | ||| ||||||| |||||||||| |||||||||||||||||||| ||||| ||||||||| | ||||||||| |
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| T |
26049311 |
ttatttgaatataacaacacagaatggtgaaagaacaaattgttttctacatgattgagaaatttgcaccgaaaagtgtttatagcttgcta |
26049402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 110
Target Start/End: Complemental strand, 328641 - 328549
Alignment:
| Q |
17 |
atttgaatataggaatagagagtggtgaaggaacaaattggtttctacatgattgagaaatctgcacataaaagtgttgaaagcttgctattgt |
110 |
Q |
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| T |
328641 |
atttgaatataagaacacagaatggtgaaggaacaaattggattctatatgattgaggaat-tgcaccgaaaagcgtggatagcttgatattgt |
328549 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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