View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0568_high_5 (Length: 519)
Name: NF0568_high_5
Description: NF0568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0568_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 465; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 30 - 506
Target Start/End: Original strand, 42011413 - 42011889
Alignment:
| Q |
30 |
cacttgacaacagccgcagtagtctgatcccaagtacttccattgaactaactacttacacttaaaattatcttatttatctgtcgaaactgagagcttc |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
42011413 |
cacttgacaacagccgcagtagtctgatcccaagtacttccattgaactagctacttaaacttaaaattatcttatttatctgtcgaaactgagagcttc |
42011512 |
T |
|
| Q |
130 |
aaagcatggcttttacatcaactgctctacaatatccatccacatcatatttacaatccttggtaccttccttagaaggtacacgtgatcaaaattcatg |
229 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42011513 |
aaagcatggcttttacatcaactgctctacaatatccatccacatcatatttacaatccttggtaccttccttagaaggtacacgtgatcaaaattcatg |
42011612 |
T |
|
| Q |
230 |
gtgtgtcagagtgagatcatacaaacccacttctcaaaaatcacaactgaactttgcaagagggattacagtccagagcgcagccacaaaaccagccaag |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42011613 |
gtgtgtcagagtgagatcatacaaacccacttctcaaaaatcacaactgaactttgcaagagggattacagtccagagcgcagccacaaaaccagccaag |
42011712 |
T |
|
| Q |
330 |
tcaccaggtatcttttctgagttactcttcctgaattaaattgttacagcactttaaagacgtgatagaaacttaacttaacttcactttgtttggaggt |
429 |
Q |
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|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42011713 |
tcaccaggtatctgttctgagttactcttcctgaattaaattgttacagcactttaaagacgtgatagaaacttaacttaacttcactttgtttggaggt |
42011812 |
T |
|
| Q |
430 |
aatagctgaagaagaatggaaagttaagcgagaattactgctgcaaaaaagggtaaagctctacctctctatcatct |
506 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42011813 |
aatagctgaagaagaatggaaagttaagcgagaattactgctgcaaaaaagggtaaagctctacctctctatcatct |
42011889 |
T |
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