View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0568_high_8 (Length: 400)
Name: NF0568_high_8
Description: NF0568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0568_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 52 - 388
Target Start/End: Original strand, 38052035 - 38052371
Alignment:
| Q |
52 |
ttattgtccgttgtagatggagaagagtcttctcgatgaaaaaatcaattcatattacaaaactaaaactaaacttctattatattgctccagaattgcc |
151 |
Q |
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| T |
38052035 |
ttattgttcgttgtagatggagaagagtcttctcgatgaagaaatcaattcatattacaaaactaaaactaaacttctattatattgctctagaattgcc |
38052134 |
T |
|
| Q |
152 |
ctaaacttcaaactcttgaaattttcttcnnnnnnnggttcaacaaaacctttctctaaaaagtatctccaaaaccgccggattttaaacatagttccat |
251 |
Q |
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| T |
38052135 |
ctaaacttcaaactcttgaaattttcttctttttttggttcaacaaaatctttctctaaaaagtatctccaaaactgccggattttaaacatagttccat |
38052234 |
T |
|
| Q |
252 |
caaactttttgatagagtctgaaactaaaatacaaaccataacaaattgtttaaatctctgtaagttgatgttttggtgctctttaaattgggatttaat |
351 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38052235 |
caaactttttgatagagtctgaaactaaaatacaaaccataacaaattgtttaaatctctgtaagttgatgttttggtgctctttaaattgggatttaat |
38052334 |
T |
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| Q |
352 |
tatattaaaaagcatacaacctagtgattatgatatt |
388 |
Q |
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| T |
38052335 |
tatattaaaaagcatacaacctagtgattatgatatt |
38052371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 195 - 258
Target Start/End: Complemental strand, 40254122 - 40254061
Alignment:
| Q |
195 |
caaaacctttctctaaaaagtatctccaaaaccgccggattttaaacatagttccatcaaactt |
258 |
Q |
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| T |
40254122 |
caaaacttttctctaaaa--tatctccataaccactgggttttaaacatagttcgatcaaactt |
40254061 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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