View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0568_low_1 (Length: 759)

Name: NF0568_low_1
Description: NF0568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0568_low_1
NF0568_low_1
[»] chr6 (21 HSPs)
chr6 (383-715)||(2438800-2439156)
chr6 (92-241)||(2439330-2439479)
chr6 (546-715)||(3676331-3676505)
chr6 (92-229)||(2642057-2642194)
chr6 (592-699)||(2537059-2537169)
chr6 (92-228)||(2673217-2673353)
chr6 (592-678)||(16316657-16316743)
chr6 (592-664)||(10927869-10927941)
chr6 (592-663)||(27901260-27901331)
chr6 (595-669)||(32249936-32250010)
chr6 (92-214)||(2591304-2591428)
chr6 (92-214)||(2569842-2569964)
chr6 (92-214)||(2622850-2622972)
chr6 (92-200)||(2450096-2450204)
chr6 (555-625)||(17590000-17590070)
chr6 (592-642)||(23915527-23915577)
chr6 (97-210)||(2597403-2597516)
chr6 (656-715)||(3676767-3676831)
chr6 (583-625)||(17589948-17589990)
chr6 (548-593)||(10927743-10927788)
chr6 (546-587)||(35219457-35219498)
[»] chr3 (18 HSPs)
chr3 (546-651)||(22176437-22176542)
chr3 (546-651)||(22101492-22101597)
chr3 (592-699)||(44822221-44822331)
chr3 (592-715)||(22101929-22102057)
chr3 (594-669)||(53359493-53359568)
chr3 (592-657)||(35863689-35863754)
chr3 (592-699)||(28096290-28096400)
chr3 (592-664)||(35369078-35369150)
chr3 (592-669)||(22176876-22176953)
chr3 (596-669)||(22833299-22833372)
chr3 (92-229)||(53393344-53393481)
chr3 (592-669)||(7115968-7116045)
chr3 (596-654)||(7116577-7116635)
chr3 (597-663)||(34492078-34492144)
chr3 (596-664)||(3422631-3422699)
chr3 (546-586)||(3422811-3422851)
chr3 (546-585)||(22101801-22101840)
chr3 (555-592)||(42897030-42897067)
[»] chr5 (11 HSPs)
chr5 (546-699)||(28221965-28222120)
chr5 (592-699)||(28263786-28263896)
chr5 (549-662)||(3160861-3160973)
chr5 (592-664)||(1190401-1190473)
chr5 (617-662)||(3160809-3160854)
chr5 (546-587)||(38938772-38938813)
chr5 (546-593)||(28766093-28766140)
chr5 (539-593)||(7464327-7464381)
chr5 (539-593)||(39850686-39850740)
chr5 (617-662)||(3160756-3160801)
chr5 (553-586)||(38939034-38939067)
[»] chr4 (19 HSPs)
chr4 (578-699)||(11974680-11974804)
chr4 (592-699)||(44814511-44814621)
chr4 (596-699)||(3729490-3729596)
chr4 (546-625)||(11974809-11974888)
chr4 (592-664)||(54198299-54198370)
chr4 (596-667)||(38001454-38001525)
chr4 (594-699)||(9162593-9162701)
chr4 (593-664)||(44673273-44673344)
chr4 (595-699)||(5525027-5525132)
chr4 (591-669)||(12216960-12217038)
chr4 (555-614)||(33728869-33728928)
chr4 (555-593)||(2291288-2291326)
chr4 (547-593)||(9162916-9162962)
chr4 (546-587)||(49358018-49358059)
chr4 (549-586)||(54198471-54198508)
chr4 (597-699)||(10726370-10726475)
chr4 (597-699)||(10940139-10940244)
chr4 (546-593)||(44814376-44814423)
chr4 (546-587)||(11064724-11064765)
[»] chr7 (11 HSPs)
chr7 (546-664)||(9329647-9329764)
chr7 (592-664)||(11321279-11321351)
chr7 (592-663)||(41755438-41755509)
chr7 (592-699)||(35492178-35492287)
chr7 (592-669)||(47221000-47221077)
chr7 (596-699)||(20621218-20621324)
chr7 (592-669)||(9307724-9307799)
chr7 (599-662)||(9302210-9302273)
chr7 (599-662)||(9306648-9306711)
chr7 (549-586)||(45022631-45022668)
chr7 (636-669)||(9303286-9303319)
[»] chr1 (14 HSPs)
chr1 (596-699)||(14494798-14494902)
chr1 (592-699)||(237176-237284)
chr1 (592-661)||(29699187-29699256)
chr1 (592-664)||(50231531-50231603)
chr1 (592-660)||(8528219-8528287)
chr1 (592-693)||(9041223-9041327)
chr1 (605-669)||(20133038-20133102)
chr1 (611-663)||(43575210-43575262)
chr1 (599-669)||(14245889-14245959)
chr1 (546-593)||(24162672-24162719)
chr1 (546-593)||(43577183-43577230)
chr1 (546-593)||(50231398-50231445)
chr1 (592-658)||(49265943-49266009)
chr1 (592-625)||(9046387-9046420)
[»] chr2 (15 HSPs)
chr2 (547-704)||(44972992-44973148)
chr2 (596-669)||(35193434-35193507)
chr2 (592-669)||(309848-309925)
chr2 (596-749)||(7061867-7062025)
chr2 (596-669)||(43528444-43528517)
chr2 (592-663)||(44539531-44539602)
chr2 (592-669)||(13594515-13594592)
chr2 (546-593)||(19901609-19901656)
chr2 (592-643)||(25047962-25048013)
chr2 (546-582)||(44539702-44539738)
chr2 (546-593)||(7061734-7061781)
chr2 (546-593)||(21956532-21956579)
chr2 (539-593)||(8063236-8063290)
chr2 (611-653)||(27339513-27339555)
chr2 (540-582)||(43528298-43528340)
[»] scaffold0066 (2 HSPs)
scaffold0066 (594-699)||(56467-56575)
scaffold0066 (546-587)||(56333-56374)
[»] chr8 (5 HSPs)
chr8 (592-661)||(24432233-24432302)
chr8 (596-669)||(5592692-5592765)
chr8 (547-593)||(32889059-32889105)
chr8 (539-582)||(26528069-26528112)
chr8 (546-586)||(32889177-32889217)
[»] scaffold0025 (1 HSPs)
scaffold0025 (592-669)||(3490-3567)
[»] scaffold0123 (1 HSPs)
scaffold0123 (595-715)||(17180-17305)
[»] scaffold0086 (1 HSPs)
scaffold0086 (539-593)||(48321-48376)


Alignment Details
Target: chr6 (Bit Score: 213; Significance: 1e-116; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 383 - 715
Target Start/End: Complemental strand, 2439156 - 2438800
Alignment:
Q  383 cataattactcagcaatttcttaacataatttagaaaaacatttagccatttagacaaaattatttcaggacatgtagaccattcataaggcttcatgtt 482  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||    
T  2439156 cataattactcagcaatttcttaacataatttagaaaaacatttagccatttagacaaaatt---tcaggacatgtagaccattcataaggcttcatgtt 2439060  T
Q  483 tgtttgtacatttataatgcactaaacacactattcatctatatcta-------------gaaaactaccattttc-----------gggttgaactttt 558  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||             |||||||| |||||||           |||||||||||||    
T  2439059 tgtttgaacatttataatgcactaaacacactattcatctatatctatactatatataaagaaaactatcattttcagcatacttttgggttgaactttt 2438960  T
Q  559 ctttcaaaaaatacccttaattttaaatataaatagccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttt 658  Q
    ||||| ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2438959 ctttccaaaaatacccttaattttaaatacaaatagtcaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttt 2438860  T
Q  659 tacctctgttatccaaagat-actcacaaaaaactaacac--aacaaaatttcatgttac 715  Q
    |||||||||||||||||||| |  | ||||||||||||||  ||||||||||||||||||    
T  2438859 tacctctgttatccaaagatcaaactcaaaaaactaacacaaaacaaaatttcatgttac 2438800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 142; E-Value: 4e-74
Query Start/End: Original strand, 92 - 241
Target Start/End: Complemental strand, 2439479 - 2439330
Alignment:
Q  92 actgatatcataacaatggatagtctccatgtaatgattagacccattgtacaggttactaccattgctgatatagtttgtaccactagtgacaaactat 191  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  2439479 actgatatcataacaatggatagtctccatgtaataattagacccattgtacatgttactaccattgctgatatagtttgtaccactagtgacaaactat 2439380  T
Q  192 cacccaccacagatcttacctgtattattaatttgaaaaacaaaagttac 241  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2439379 cacccaccacagatcttacctgtattattaatttgaaaaacaaaagttac 2439330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 546 - 715
Target Start/End: Original strand, 3676331 - 3676505
Alignment:
Q  546 gggttgaacttttctttcaaaaaatacccttaattttaaatataaatagccaattataaaataacacgtggattagtaattcatgtcactaatcgtcccc 645  Q
    |||||| ||||||||| | ||||||||||||||||||||||| |||||| |||||||| ||||||||||||||||||||| ||| ||||||||||||||     
T  3676331 gggttggacttttcttcccaaaaatacccttaattttaaatacaaatagtcaattatacaataacacgtggattagtaatccatatcactaatcgtccct 3676430  T
Q  646 gttaaccctcttttacctctgttatccaaagat---actcacaaaaaacta--acacaacaaaatttcatgttac 715  Q
    |||||||||||||||||||||||||||||||||   |||||||||||||||  ||| ||||||||||||||||||    
T  3676431 gttaaccctcttttacctctgttatccaaagatcaaactcacaaaaaactatcacaaaacaaaatttcatgttac 3676505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 92 - 229
Target Start/End: Original strand, 2642057 - 2642194
Alignment:
Q  92 actgatatcataacaatggatagtctccatgtaatgattagacccattgtacaggttactaccattgctgatatagtttgtaccactagtgacaaactat 191  Q
    |||| |||||||||||||| |||||||||||  ||||||| |||||||||  | | || ||||| ||||||||| |||||||||||||| | ||| ||||    
T  2642057 actgctatcataacaatggctagtctccatgcgatgattaaacccattgtgaatgatattaccactgctgatattgtttgtaccactagcgccaatctat 2642156  T
Q  192 cacccaccacagatcttacctgtattattaatttgaaa 229  Q
    ||| ||||| ||||||||||||| ||||||||||||||    
T  2642157 cactcaccaaagatcttacctgtgttattaatttgaaa 2642194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 592 - 699
Target Start/End: Original strand, 2537059 - 2537169
Alignment:
Q  592 tagccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctctgttatccaaagat---actcacaaaa 688  Q
    ||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||||||| ||||||||| |||| ||| ||||   ||||||||||    
T  2537059 tagccaattataaaataacacgtgggttactaatccatgtcactaatcgtccccgttaaccctattttacctccgttaaccacagatcaaactcacaaaa 2537158  T
Q  689 aactaacacaa 699  Q
    ||||| |||||    
T  2537159 aactagcacaa 2537169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 92 - 228
Target Start/End: Original strand, 2673217 - 2673353
Alignment:
Q  92 actgatatcataacaatggatagtctccatgtaatgattagacccattgtacaggttactaccattgctgatatagtttgtaccactagtgacaaactat 191  Q
    |||| ||||||||||||||  |||||||||| ||||||||| ||||||||  | | || ||||| |||||| || |||||||||||||| | ||| ||||    
T  2673217 actgctatcataacaatggcgagtctccatgcaatgattagtcccattgtgaatgctattaccactgctgaaattgtttgtaccactagagccaatctat 2673316  T
Q  192 cacccaccacagatcttacctgtattattaatttgaa 228  Q
    ||||||||| ||||||||||||| | |||||||||||    
T  2673317 cacccaccaaagatcttacctgtgtaattaatttgaa 2673353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 592 - 678
Target Start/End: Complemental strand, 16316743 - 16316657
Alignment:
Q  592 tagccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctctgttatccaaagat 678  Q
    |||| |||||||||||||||||||||||| |||| |||||||||||||||| |||||||||||||||||||| ||||| ||| ||||    
T  16316743 tagctaattataaaataacacgtggattactaatccatgtcactaatcgtctccgttaaccctcttttacctatgttaaccatagat 16316657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 592 - 664
Target Start/End: Original strand, 10927869 - 10927941
Alignment:
Q  592 tagccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctc 664  Q
    ||||||||||||||||||||||||||||| |||| ||||||| ||||||||| ||||||||||||||||||||    
T  10927869 tagccaattataaaataacacgtggattactaatccatgtcaataatcgtcctcgttaaccctcttttacctc 10927941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 592 - 663
Target Start/End: Complemental strand, 27901331 - 27901260
Alignment:
Q  592 tagccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacct 663  Q
    ||||||||||||||||||||| ||||||| |||| ||||| ||| |||||||||||||||||||||||||||    
T  27901331 tagccaattataaaataacacatggattactaatccatgttactgatcgtccccgttaaccctcttttacct 27901260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 595 - 669
Target Start/End: Complemental strand, 32250010 - 32249936
Alignment:
Q  595 ccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctctgtta 669  Q
    |||||||||||||||||||| ||||| |||| |||||||||||||||| | ||||||| ||||||||||||||||    
T  32250010 ccaattataaaataacacgtagattactaatccatgtcactaatcgtctctgttaaccatcttttacctctgtta 32249936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 92 - 214
Target Start/End: Complemental strand, 2591428 - 2591304
Alignment:
Q  92 actgatatcataacaatggatagtctccatgtaatgat--tagacccattgtacaggttactaccattgctgatatagtttgtaccactagtgacaaact 189  Q
    |||| |||||||||||||| ||||||||||| ||||||  ||| ||||||||  | | || ||||| |||||| || |||||||||||||| | ||| ||    
T  2591428 actgctatcataacaatggctagtctccatgcaatgatattagtcccattgtgaatgctattaccactgctgaaattgtttgtaccactagagccaatct 2591329  T
Q  190 atcacccaccacagatcttacctgt 214  Q
    ||||||||||| |||||||||||||    
T  2591328 atcacccaccaaagatcttacctgt 2591304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 92 - 214
Target Start/End: Original strand, 2569842 - 2569964
Alignment:
Q  92 actgatatcataacaatggatagtctccatgtaatgattagacccattgtacaggttactaccattgctgatatagtttgtaccactagtgacaaactat 191  Q
    |||| |||||||||||||| |||| |||||| ||||||||| ||||||||  | | || |||||  ||||| || |||||||| |||| || ||| ||||    
T  2569842 actgctatcataacaatggctagtttccatgcaatgattaggcccattgtgaatgctattaccaccgctgaaattgtttgtactactaatgccaatctat 2569941  T
Q  192 cacccaccacagatcttacctgt 214  Q
    ||||||||| |||||||||||||    
T  2569942 cacccaccaaagatcttacctgt 2569964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 92 - 214
Target Start/End: Complemental strand, 2622972 - 2622850
Alignment:
Q  92 actgatatcataacaatggatagtctccatgtaatgattagacccattgtacaggttactaccattgctgatatagtttgtaccactagtgacaaactat 191  Q
    |||| |||||||||||||| || |||||||| ||| | ||| ||||||||  | | || ||||| |||||| || ||||||| |||||| ||||| ||||    
T  2622972 actgctatcataacaatggctaatctccatgcaataagtagtcccattgtgaatgctattaccactgctgaaattgtttgtatcactagagacaatctat 2622873  T
Q  192 cacccaccacagatcttacctgt 214  Q
    ||||||||| |||||||||||||    
T  2622872 cacccaccaaagatcttacctgt 2622850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 92 - 200
Target Start/End: Complemental strand, 2450204 - 2450096
Alignment:
Q  92 actgatatcataacaatggatagtctccatgtaatgattagacccattgtacaggttactaccattgctgatatagtttgtaccactagtgacaaactat 191  Q
    |||| |||||||||||| ||||||||||||||||||||||| |||||| |  | |||  ||||| ||||||||| ||||||||||||  |   |||||||    
T  2450204 actgctatcataacaattgatagtctccatgtaatgattagtcccattatgaatgttgttaccactgctgatatggtttgtaccactgttcctaaactat 2450105  T
Q  192 cacccacca 200  Q
    |||||||||    
T  2450104 cacccacca 2450096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 555 - 625
Target Start/End: Complemental strand, 17590070 - 17590000
Alignment:
Q  555 ttttctttcaaaaaatacccttaattttaaatataaatagccaattataaaataacacgtggattagtaat 625  Q
    ||||||||| ||||||||| |||||||||| || ||||| |  |||| |||||||||||||||||||||||    
T  17590070 ttttctttccaaaaataccattaattttaattacaaataactcattacaaaataacacgtggattagtaat 17590000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 592 - 642
Target Start/End: Complemental strand, 23915577 - 23915527
Alignment:
Q  592 tagccaattataaaataacacgtggattagtaattcatgtcactaatcgtc 642  Q
    ||||||||||||||||||||||||||||| ||||  |||||||||||||||    
T  23915577 tagccaattataaaataacacgtggattactaatctatgtcactaatcgtc 23915527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 97 - 210
Target Start/End: Original strand, 2597403 - 2597516
Alignment:
Q  97 tatcataacaatggatagtctccatgtaatgattagacccattgtacaggttactaccattgctgatatagtttgtaccactagtgacaaactatcaccc 196  Q
    |||||||||||||| ||||||||||| ||||||||| ||||||||  | | || || || |||||| || ||||||||  ||| || ||| | |||||||    
T  2597403 tatcataacaatggttagtctccatgcaatgattaggcccattgtgaatgctattatcactgctgaaattgtttgtactgctaatgccaatcgatcaccc 2597502  T
Q  197 accacagatcttac 210  Q
    |||| |||||||||    
T  2597503 accaaagatcttac 2597516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 656 - 715
Target Start/End: Original strand, 3676767 - 3676831
Alignment:
Q  656 ttttacctctgttatccaaagat---actcacaaaaaacta--acacaacaaaatttcatgttac 715  Q
    |||||||||||||||||||||||   |||||||||||||||  ||| ||||||||||||||||||    
T  3676767 ttttacctctgttatccaaagatcaaactcacaaaaaactatcacaaaacaaaatttcatgttac 3676831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 583 - 625
Target Start/End: Complemental strand, 17589990 - 17589948
Alignment:
Q  583 aaatataaatagccaattataaaataacacgtggattagtaat 625  Q
    ||||| ||||||||||||||||| |||||||||||||||||||    
T  17589990 aaatacaaatagccaattataaattaacacgtggattagtaat 17589948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 548 - 593
Target Start/End: Original strand, 10927743 - 10927788
Alignment:
Q  548 gttgaacttttctttcaaaaaatacccttaattttaaatataaata 593  Q
    |||||| ||||||||| |||||||| ||||||||||||||||||||    
T  10927743 gttgaaattttctttccaaaaatactcttaattttaaatataaata 10927788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 546 - 587
Target Start/End: Complemental strand, 35219498 - 35219457
Alignment:
Q  546 gggttgaacttttctttcaaaaaatacccttaattttaaata 587  Q
    |||||| ||||||||||| |||||||||||||||||||||||    
T  35219498 gggttggacttttctttccaaaaatacccttaattttaaata 35219457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 86; Significance: 1e-40; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 546 - 651
Target Start/End: Original strand, 22176437 - 22176542
Alignment:
Q  546 gggttgaacttttctttcaaaaaatacccttaattttaaatataaatagccaattataaaataacacgtggattagtaattcatgtcactaatcgtcccc 645  Q
    |||||||||||||||||  ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |    
T  22176437 gggttgaacttttcttttcaaaaatacccttaattttaaatacaaatagccaattataaaataacacgtggattagtaatccatgtcactaatcgtccac 22176536  T
Q  646 gttaac 651  Q
    ||||||    
T  22176537 gttaac 22176542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 546 - 651
Target Start/End: Original strand, 22101492 - 22101597
Alignment:
Q  546 gggttgaacttttctttcaaaaaatacccttaattttaaatataaatagccaattataaaataacacgtggattagtaattcatgtcactaatcgtcccc 645  Q
    |||||||||||||||||  ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||  |    
T  22101492 gggttgaacttttcttttcaaaaatacctttaattttaaatacaaatagccaattataaaataacacgtggattagtaatccatgtcactaatcgtcaac 22101591  T
Q  646 gttaac 651  Q
    ||||||    
T  22101592 gttaac 22101597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 592 - 699
Target Start/End: Original strand, 44822221 - 44822331
Alignment:
Q  592 tagccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctctgttatccaaagat---actcacaaaa 688  Q
    ||||||||||||||| ||||| ||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||   ||| ||||||    
T  44822221 tagccaattataaaacaacacatggattactaattcatgtcactaatcgtccccgttaaccctcttttacatctgttaaccaaagatcaaacttacaaaa 44822320  T
Q  689 aactaacacaa 699  Q
    ||||| |||||    
T  44822321 aactagcacaa 44822331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 592 - 715
Target Start/End: Original strand, 22101929 - 22102057
Alignment:
Q  592 tagccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctctgttatccaaagat---actcacaaaa 688  Q
    ||||| ||||||||||||||| ||||||| |||| ||||||||||||||||||| |||||||||||||||||| |||| ||| | ||   ||||||||||    
T  22101929 tagcctattataaaataacacatggattactaatccatgtcactaatcgtccccattaaccctcttttacctccgttaaccacaaatcaaactcacaaaa 22102028  T
Q  689 aactaacac--aacaaaatttcatgttac 715  Q
    ||||| |||  |||||||  |||||||||    
T  22102029 aactagcactaaacaaaaagtcatgttac 22102057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 594 - 669
Target Start/End: Original strand, 53359493 - 53359568
Alignment:
Q  594 gccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctctgtta 669  Q
    ||||||||||||||| |||||| |||| |||||||||||||||||| |||||||||||||||||||||||| ||||    
T  53359493 gccaattataaaatagcacgtgaattattaattcatgtcactaatcatccccgttaaccctcttttacctccgtta 53359568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 592 - 657
Target Start/End: Complemental strand, 35863754 - 35863689
Alignment:
Q  592 tagccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctctt 657  Q
    ||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| ||||    
T  35863754 tagccaattataaaataacacgtggattactaatccatgtcactaatcgtccccgttaaccatctt 35863689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 592 - 699
Target Start/End: Original strand, 28096290 - 28096400
Alignment:
Q  592 tagccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctctgttatccaaagat---actcacaaaa 688  Q
    |||||||||||||||||||| || ||||| |||| ||||||||||||||||| ||||||||||||||| |||| ||||  || ||||   ||||||||||    
T  28096290 tagccaattataaaataacatgttgattactaatccatgtcactaatcgtcctcgttaaccctcttttccctccgttaatcacagatcaaactcacaaaa 28096389  T
Q  689 aactaacacaa 699  Q
    ||||| |||||    
T  28096390 aactagcacaa 28096400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 592 - 664
Target Start/End: Original strand, 35369078 - 35369150
Alignment:
Q  592 tagccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctc 664  Q
    ||||||||||||||||||||| ||||||| |||| ||||||||||||||||||| |||||| |||||||||||    
T  35369078 tagccaattataaaataacacatggattactaatccatgtcactaatcgtccccattaaccatcttttacctc 35369150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 592 - 669
Target Start/End: Original strand, 22176876 - 22176953
Alignment:
Q  592 tagccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctctgtta 669  Q
    ||||| ||||||||||||||| ||||||| |||| ||||||||||||||||||| |||||||| ||||||||| ||||    
T  22176876 tagcctattataaaataacacatggattactaatccatgtcactaatcgtccccattaacccttttttacctccgtta 22176953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 596 - 669
Target Start/End: Original strand, 22833299 - 22833372
Alignment:
Q  596 caattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctctgtta 669  Q
    ||||||||||||||||||||||||| |||| ||||||||||||||| | |||| |||| |||||||||||||||    
T  22833299 caattataaaataacacgtggattactaatccatgtcactaatcgttctcgttgacccacttttacctctgtta 22833372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 92 - 229
Target Start/End: Complemental strand, 53393481 - 53393344
Alignment:
Q  92 actgatatcataacaatggatagtctccatgtaatgattagacccattgtacaggttactaccattgctgatatagtttgtaccactagtgacaaactat 191  Q
    |||| |||||||||||||| ||||||||||| |||||||| |||||||||  | | || ||||| ||| ||||| |||| ||| ||||| | ||| ||||    
T  53393481 actgctatcataacaatggctagtctccatgcaatgattaaacccattgtgaatgatattaccactgccgatattgtttttacaactagcgccaatctat 53393382  T
Q  192 cacccaccacagatcttacctgtattattaatttgaaa 229  Q
    |||  |||| |||||||| | || ||||||||||||||    
T  53393381 cactaaccaaagatcttaaccgtgttattaatttgaaa 53393344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 592 - 669
Target Start/End: Complemental strand, 7116045 - 7115968
Alignment:
Q  592 tagccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctctgtta 669  Q
    |||| ||||||||||||||||||| |||| || | ||||| |||||| ||||||||||| ||||||||||||| ||||    
T  7116045 tagcaaattataaaataacacgtgtattactagtccatgttactaattgtccccgttaatcctcttttacctccgtta 7115968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 596 - 654
Target Start/End: Complemental strand, 7116635 - 7116577
Alignment:
Q  596 caattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccct 654  Q
    |||||||||||||||||||| |||| | ||||||||||||||| ||||| |||||||||    
T  7116635 caattataaaataacacgtgaattaatgattcatgtcactaattgtcccggttaaccct 7116577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 597 - 663
Target Start/End: Original strand, 34492078 - 34492144
Alignment:
Q  597 aattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacct 663  Q
    ||||||||||||||||||| |||| |||| |||||||||||| ||  |||||||| |||||||||||    
T  34492078 aattataaaataacacgtgaattactaatccatgtcactaatagtttccgttaactctcttttacct 34492144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 596 - 664
Target Start/End: Complemental strand, 3422699 - 3422631
Alignment:
Q  596 caattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctc 664  Q
    |||||||||| ||||| |||||||| |||| ||||||  ||||||| ||||||| ||||||||||||||    
T  3422699 caattataaagtaacatgtggattattaatccatgtctttaatcgtacccgttatccctcttttacctc 3422631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 546 - 586
Target Start/End: Complemental strand, 3422851 - 3422811
Alignment:
Q  546 gggttgaacttttctttcaaaaaatacccttaattttaaat 586  Q
    |||||| ||||||||||| ||||||||||||||||||||||    
T  3422851 gggttggacttttctttccaaaaatacccttaattttaaat 3422811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 546 - 585
Target Start/End: Original strand, 22101801 - 22101840
Alignment:
Q  546 gggttgaacttttctttcaaaaaatacccttaattttaaa 585  Q
    |||||||||||||||||  |||||||||||||||||||||    
T  22101801 gggttgaacttttcttttcaaaaatacccttaattttaaa 22101840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 555 - 592
Target Start/End: Complemental strand, 42897067 - 42897030
Alignment:
Q  555 ttttctttcaaaaaatacccttaattttaaatataaat 592  Q
    ||||||||| ||||||||||||||||||||||| ||||    
T  42897067 ttttctttccaaaaatacccttaattttaaatacaaat 42897030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 79; Significance: 2e-36; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 546 - 699
Target Start/End: Original strand, 28221965 - 28222120
Alignment:
Q  546 gggttgaacttttctttcaaaaaatacccttaattttaaatataaatagccaattataaaataacacgtggattagtaattcatgtcactaatcgtcccc 645  Q
    |||||| ||||||||||| ||||||||||||||||||||||| |||||| |||||||||||||||| ||||||||||||| |||||||||||  ||  |     
T  28221965 gggttggacttttctttccaaaaatacccttaattttaaatacaaatagtcaattataaaataacatgtggattagtaatccatgtcactaactgt-act 28222063  T
Q  646 gttaaccctcttttacctctgttatccaaagat---actcacaaaaaactaacacaa 699  Q
    ||||||||||||||||||  |||| ||||||||   ||||||||||||||| |||||    
T  28222064 gttaaccctcttttaccttcgttaaccaaagatcaaactcacaaaaaactagcacaa 28222120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 592 - 699
Target Start/End: Complemental strand, 28263896 - 28263786
Alignment:
Q  592 tagccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctctgttatccaaagat---actcacaaaa 688  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| ||| | ||   ||||||||||    
T  28263896 tagccaattataaaataacacgtggattactaattcatgtcactaatcgtccccgttaactctcttttacctctgttaaccacatatcaaactcacaaaa 28263797  T
Q  689 aactaacacaa 699  Q
    ||||| |||||    
T  28263796 aactagcacaa 28263786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 549 - 662
Target Start/End: Complemental strand, 3160973 - 3160861
Alignment:
Q  549 ttgaacttttctttcaaaaaatacccttaattttaaatataaatagccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgtt 648  Q
    ||||||||||||||| |||| ||||||||||||| |||| || ||  |||||||||||||||| ||| ||||||||| ||| |||||||||  | |||||    
T  3160973 ttgaacttttctttccaaaa-tacccttaattttgaatacaattaatcaattataaaataacatgtgaattagtaatccatatcactaatcagctccgtt 3160875  T
Q  649 aaccctcttttacc 662  Q
    ||||||||||||||    
T  3160874 aaccctcttttacc 3160861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 592 - 664
Target Start/End: Original strand, 1190401 - 1190473
Alignment:
Q  592 tagccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctc 664  Q
    ||||||||||||||||||||| || |||| |||| |||||||  |||||||||||||||||||||||||||||    
T  1190401 tagccaattataaaataacacatgaattactaatccatgtcaacaatcgtccccgttaaccctcttttacctc 1190473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 617 - 662
Target Start/End: Complemental strand, 3160854 - 3160809
Alignment:
Q  617 attagtaattcatgtcactaatcgtccccgttaaccctcttttacc 662  Q
    |||| |||||||||||||||||| || |||||||||||||||||||    
T  3160854 attaataattcatgtcactaatcatctccgttaaccctcttttacc 3160809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 546 - 587
Target Start/End: Complemental strand, 38938813 - 38938772
Alignment:
Q  546 gggttgaacttttctttcaaaaaatacccttaattttaaata 587  Q
    |||||| ||||||||||| |||||||||||||||||||||||    
T  38938813 gggttggacttttctttccaaaaatacccttaattttaaata 38938772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 546 - 593
Target Start/End: Original strand, 28766093 - 28766140
Alignment:
Q  546 gggttgaacttttctttcaaaaaatacccttaattttaaatataaata 593  Q
    |||||||| ||||||||| |||||||||||||||||| |||| |||||    
T  28766093 gggttgaatttttctttccaaaaatacccttaatttttaatacaaata 28766140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 539 - 593
Target Start/End: Complemental strand, 7464381 - 7464327
Alignment:
Q  539 cattttcgggttgaacttttctttcaaaaaatacccttaattttaaatataaata 593  Q
    |||||| |||||||||||||||||| ||||||||| | |||||| |||| |||||    
T  7464381 catttttgggttgaacttttctttccaaaaataccttcaattttcaatacaaata 7464327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 539 - 593
Target Start/End: Original strand, 39850686 - 39850740
Alignment:
Q  539 cattttcgggttgaacttttctttcaaaaaatacccttaattttaaatataaata 593  Q
    |||||| |||||| |||||||||||||||||||| || |||||| |||| |||||    
T  39850686 catttttgggttggacttttctttcaaaaaatactctcaattttcaatagaaata 39850740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 617 - 662
Target Start/End: Complemental strand, 3160801 - 3160756
Alignment:
Q  617 attagtaattcatgtcactaatcgtccccgttaaccctcttttacc 662  Q
    ||||||||| ||||||||||||| || | |||||||||||||||||    
T  3160801 attagtaatccatgtcactaatcatctctgttaaccctcttttacc 3160756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 553 - 586
Target Start/End: Complemental strand, 38939067 - 38939034
Alignment:
Q  553 acttttctttcaaaaaatacccttaattttaaat 586  Q
    ||||||||||| ||||||||||||||||||||||    
T  38939067 acttttctttccaaaaatacccttaattttaaat 38939034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 79; Significance: 2e-36; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 578 - 699
Target Start/End: Complemental strand, 11974804 - 11974680
Alignment:
Q  578 attttaaatataaatagccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctctgttatccaaaga 677  Q
    |||||||||| |||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||| |||||||||||| |||| |||||||    
T  11974804 attttaaatacaaatagccaattataaaataacacatggattagtaattcatgccactaatcgtctccgttaactctcttttacctccgttaaccaaaga 11974705  T
Q  678 t---actcacaaaaaactaacacaa 699  Q
    |   ||||||||||||||| |||||    
T  11974704 tcaaactcacaaaaaactagcacaa 11974680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 592 - 699
Target Start/End: Original strand, 44814511 - 44814621
Alignment:
Q  592 tagccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctctgttatccaaagat---actcacaaaa 688  Q
    ||||||||||||||||||||||| ||||| ||||  ||||||||||| ||||||||||||||||||||||||| |||| ||| ||||   ||||||||||    
T  44814511 tagccaattataaaataacacgtagattactaatctatgtcactaattgtccccgttaaccctcttttacctccgttaaccatagatcaaactcacaaaa 44814610  T
Q  689 aactaacacaa 699  Q
    ||||| |||||    
T  44814611 aactagcacaa 44814621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 596 - 699
Target Start/End: Original strand, 3729490 - 3729596
Alignment:
Q  596 caattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctctgttatccaaagat---actcacaaaaaact 692  Q
    |||||||||||||||| |||||||| |||| |||||||||||||||||  ||||||||||||||||||| |||| ||| ||||   ||||||||||||||    
T  3729490 caattataaaataacatgtggattactaatacatgtcactaatcgtccatgttaaccctcttttacctccgttaaccatagatcaaactcacaaaaaact 3729589  T
Q  693 aacacaa 699  Q
    | |||||    
T  3729590 agcacaa 3729596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 546 - 625
Target Start/End: Complemental strand, 11974888 - 11974809
Alignment:
Q  546 gggttgaacttttctttcaaaaaatacccttaattttaaatataaatagccaattataaaataacacgtggattagtaat 625  Q
    |||||||||||||||||   ||||||||||||||||||| || ||||||||||||| |||||||||||||||||||||||    
T  11974888 gggttgaacttttcttttccaaaatacccttaattttaattacaaatagccaattacaaaataacacgtggattagtaat 11974809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 592 - 664
Target Start/End: Complemental strand, 54198370 - 54198299
Alignment:
Q  592 tagccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctc 664  Q
    ||||||||||||||||||||||||||||| |||| ||||||||||||| | ||||||||||||||||||||||    
T  54198370 tagccaattataaaataacacgtggattactaatccatgtcactaatcat-cccgttaaccctcttttacctc 54198299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 596 - 667
Target Start/End: Original strand, 38001454 - 38001525
Alignment:
Q  596 caattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctctgt 667  Q
    ||||||||||||||||| ||||||| |||| ||||||||||||| |||||||||||||| ||||||||||||    
T  38001454 caattataaaataacacatggattactaatccatgtcactaatcatccccgttaaccctattttacctctgt 38001525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 594 - 699
Target Start/End: Complemental strand, 9162701 - 9162593
Alignment:
Q  594 gccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctctgttatccaaagat---actcacaaaaaa 690  Q
    ||||||||||||||||||||||||||| |||| ||||||| ||||| ||| ||||||||||||||||| || |||| ||| | ||   ||||||||||||    
T  9162701 gccaattataaaataacacgtggattaataatccatgtcattaatcttccacgttaaccctcttttacatccgttaaccacaaatcaaactcacaaaaaa 9162602  T
Q  691 ctaacacaa 699  Q
    ||| |||||    
T  9162601 ctagcacaa 9162593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 593 - 664
Target Start/End: Complemental strand, 44673344 - 44673273
Alignment:
Q  593 agccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctc 664  Q
    |||||||||||| |||||||||| |||| ||||||| ||||||||| || ||||||||||||||||||||||    
T  44673344 agccaattataagataacacgtgaattactaattcacgtcactaattgttcccgttaaccctcttttacctc 44673273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 595 - 699
Target Start/End: Original strand, 5525027 - 5525132
Alignment:
Q  595 ccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctctgttatccaaagat---actcacaaaaaac 691  Q
    ||||||||||||||||| || ||||| |||| |||||||||  |||||||||||||| |||||||||||| |||| ||| | ||   |||||||||||||    
T  5525027 ccaattataaaataacaagtagattactaatccatgtcact--tcgtccccgttaactctcttttacctccgttaaccacaaatcaaactcacaaaaaac 5525124  T
Q  692 taacacaa 699  Q
    || |||||    
T  5525125 tagcacaa 5525132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 591 - 669
Target Start/End: Original strand, 12216960 - 12217038
Alignment:
Q  591 atagccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctctgtta 669  Q
    ||||||||||||||||||||| |||||||| |||| ||||||| |||| || |  |||||||||||||||||| |||||    
T  12216960 atagccaattataaaataacatgtggattactaatccatgtcagtaattgttcttgttaaccctcttttacctatgtta 12217038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 555 - 614
Target Start/End: Original strand, 33728869 - 33728928
Alignment:
Q  555 ttttctttcaaaaaatacccttaattttaaatataaatagccaattataaaataacacgt 614  Q
    ||||||||  ||||||| ||||||||||||||| |||||| |||||||||||||||||||    
T  33728869 ttttcttttcaaaaatatccttaattttaaatacaaatagtcaattataaaataacacgt 33728928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 555 - 593
Target Start/End: Complemental strand, 2291326 - 2291288
Alignment:
Q  555 ttttctttcaaaaaatacccttaattttaaatataaata 593  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  2291326 ttttctttcaaaaaatacccttaattttcaatataaata 2291288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 547 - 593
Target Start/End: Complemental strand, 9162962 - 9162916
Alignment:
Q  547 ggttgaacttttctttcaaaaaatacccttaattttaaatataaata 593  Q
    ||||| ||||||||||| ||||||||||||||||||||||| |||||    
T  9162962 ggttggacttttctttccaaaaatacccttaattttaaatacaaata 9162916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 546 - 587
Target Start/End: Original strand, 49358018 - 49358059
Alignment:
Q  546 gggttgaacttttctttcaaaaaatacccttaattttaaata 587  Q
    |||||| ||||||||||| |||||||||||||||||||||||    
T  49358018 gggttggacttttctttccaaaaatacccttaattttaaata 49358059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 549 - 586
Target Start/End: Complemental strand, 54198508 - 54198471
Alignment:
Q  549 ttgaacttttctttcaaaaaatacccttaattttaaat 586  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  54198508 ttgaacttttctttccaaaaatacccttaattttaaat 54198471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 597 - 699
Target Start/End: Original strand, 10726370 - 10726475
Alignment:
Q  597 aattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctctgttatccaaagat---actcacaaaaaacta 693  Q
    ||||||| ||||||| |||||||| ||||  ||||||  |||||||||| ||||||||||||| | | ||||| ||| | ||   |||||||||||||||    
T  10726370 aattatagaataacatgtggattactaatctatgtcataaatcgtccccattaaccctcttttgcttttgttaaccacatatcaaactcacaaaaaacta 10726469  T
Q  694 acacaa 699  Q
     |||||    
T  10726470 gcacaa 10726475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 597 - 699
Target Start/End: Original strand, 10940139 - 10940244
Alignment:
Q  597 aattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctctgttatccaaagat---actcacaaaaaacta 693  Q
    ||||||| ||||||| |||||||| ||||  ||||||  |||||||||| ||||||||||||| | | ||||| ||| | ||   |||||||||||||||    
T  10940139 aattatagaataacatgtggattactaatctatgtcataaatcgtccccattaaccctcttttgcttttgttaaccacatatcaaactcacaaaaaacta 10940238  T
Q  694 acacaa 699  Q
     |||||    
T  10940239 gcacaa 10940244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 546 - 593
Target Start/End: Original strand, 44814376 - 44814423
Alignment:
Q  546 gggttgaacttttctttcaaaaaatacccttaattttaaatataaata 593  Q
    |||| ||||||||||||| |||||||||||||||||||| | ||||||    
T  44814376 gggtagaacttttctttccaaaaatacccttaattttaattttaaata 44814423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 546 - 587
Target Start/End: Complemental strand, 11064765 - 11064724
Alignment:
Q  546 gggttgaacttttctttcaaaaaatacccttaattttaaata 587  Q
    |||||| ||||||||||| |||||||||||||||||| ||||    
T  11064765 gggttggacttttctttccaaaaatacccttaattttcaata 11064724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 67; Significance: 2e-29; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 546 - 664
Target Start/End: Original strand, 9329647 - 9329764
Alignment:
Q  546 gggttgaacttttctttcaaaaaatacccttaattttaaatataaatagccaattataaaataacacgtggattagtaattcatgtcactaatcgtcccc 645  Q
    |||||| | ||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| ||||||| ||||| || |     
T  9329647 gggttggatttttctttcaaaa-atacccttaattttaaatataaatagacaattataaaataacatgtggattagtaatccatgtcattaatcatctct 9329745  T
Q  646 gttaaccctcttttacctc 664  Q
    ||||  |||||||||||||    
T  9329746 gttagacctcttttacctc 9329764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 592 - 664
Target Start/End: Complemental strand, 11321351 - 11321279
Alignment:
Q  592 tagccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctc 664  Q
    ||||||||||||||||||||| || |||| |||||||||||||||||||||||| ||||||||||||||||||    
T  11321351 tagccaattataaaataacacatgaattactaattcatgtcactaatcgtccccattaaccctcttttacctc 11321279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 592 - 663
Target Start/End: Complemental strand, 41755509 - 41755438
Alignment:
Q  592 tagccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacct 663  Q
    ||||||||| |||||||||| |||||||| ||||||||||||| ||||||||||||||||||||||||||||    
T  41755509 tagccaattgtaaaataacatgtggattactaattcatgtcaccaatcgtccccgttaaccctcttttacct 41755438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 592 - 699
Target Start/End: Original strand, 35492178 - 35492287
Alignment:
Q  592 tagccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctctgttatccaaagat---actcacaaaa 688  Q
    |||||||||||||||||||| |||||||| |||||||||||||||||| ||| |||||||||| ||||||||| |||| ||| ||||    |||||||||    
T  35492178 tagccaattataaaataacatgtggattactaattcatgtcactaatcatcctcgttaaccct-ttttacctccgttaaccatagatcaagctcacaaaa 35492276  T
Q  689 aactaacacaa 699  Q
    ||||| |||||    
T  35492277 aactagcacaa 35492287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 592 - 669
Target Start/End: Original strand, 47221000 - 47221077
Alignment:
Q  592 tagccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctctgtta 669  Q
    |||||| ||||||||||||||||| |||| ||||||||||||||||| ||||| | ||||||||||||||||| ||||    
T  47221000 tagccagttataaaataacacgtgaattactaattcatgtcactaattgtcccagctaaccctcttttacctccgtta 47221077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 596 - 699
Target Start/End: Complemental strand, 20621324 - 20621218
Alignment:
Q  596 caattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctctgttatccaaagat---actcacaaaaaact 692  Q
    |||||||||||||||| || ||||| |||| |||||||||||||||||||||||||  ||||||||||| |||| ||| | ||   ||||||||||||||    
T  20621324 caattataaaataacaagtagattactaatccatgtcactaatcgtccccgttaactttcttttacctccgttaaccacaaatcaaactcacaaaaaact 20621225  T
Q  693 aacacaa 699  Q
    | |||||    
T  20621224 agcacaa 20621218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 592 - 669
Target Start/End: Complemental strand, 9307799 - 9307724
Alignment:
Q  592 tagccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctctgtta 669  Q
    ||||||||| ||||||| |||||| |||| |||| |||||||||| ||||||||||||||||||||||||||| ||||    
T  9307799 tagccaatt-taaaatagcacgtgcattactaatccatgtcacta-tcgtccccgttaaccctcttttacctccgtta 9307724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 599 - 662
Target Start/End: Original strand, 9302210 - 9302273
Alignment:
Q  599 ttataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacc 662  Q
    |||||||||||| ||||||||| |||| ||||| ||||||||||   |||||||||||||||||    
T  9302210 ttataaaataactcgtggattaataatccatgtaactaatcgtcattgttaaccctcttttacc 9302273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 599 - 662
Target Start/End: Original strand, 9306648 - 9306711
Alignment:
Q  599 ttataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacc 662  Q
    |||||||||||| ||||||||| |||| ||||| ||||||||||   |||||||||||||||||    
T  9306648 ttataaaataactcgtggattaataatccatgtaactaatcgtcattgttaaccctcttttacc 9306711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 549 - 586
Target Start/End: Complemental strand, 45022668 - 45022631
Alignment:
Q  549 ttgaacttttctttcaaaaaatacccttaattttaaat 586  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  45022668 ttgaacttttctttcaaaaaatacctttaattttaaat 45022631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 636 - 669
Target Start/End: Complemental strand, 9303319 - 9303286
Alignment:
Q  636 aatcgtccccgttaaccctcttttacctctgtta 669  Q
    ||||||||||||||||||||||||||||| ||||    
T  9303319 aatcgtccccgttaaccctcttttacctccgtta 9303286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 4e-28; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 596 - 699
Target Start/End: Original strand, 14494798 - 14494902
Alignment:
Q  596 caattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctctgttatcca-aagatactcacaaaaaactaa 694  Q
    ||||||||||||||||||||||||| |||| |||||||||||||||| |||||||||||||||||||||||||| ||| |  | |||||||||||||||     
T  14494798 caattataaaataacacgtggattactaatccatgtcactaatcgtctccgttaaccctcttttacctctgttaaccacatcaaactcacaaaaaactag 14494897  T
Q  695 cacaa 699  Q
    |||||    
T  14494898 cacaa 14494902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 592 - 699
Target Start/End: Original strand, 237176 - 237284
Alignment:
Q  592 tagccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctctgttatccaaagat--actcacaaaaa 689  Q
    |||||||||||||||||||||||| |||| |||| |||||||||||||||| || |||||||||||||||||| |||| ||| ||||  | |||||||||    
T  237176 tagccaattataaaataacacgtg-attactaatccatgtcactaatcgtctcctttaaccctcttttacctccgttaaccatagatcaaatcacaaaaa 237274  T
Q  690 actaacacaa 699  Q
    |||| |||||    
T  237275 actagcacaa 237284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 592 - 661
Target Start/End: Complemental strand, 29699256 - 29699187
Alignment:
Q  592 tagccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttac 661  Q
    ||||||||||||||||||||||||||||| |||| ||||||||| |||||||||||||||| ||||||||    
T  29699256 tagccaattataaaataacacgtggattactaatccatgtcactgatcgtccccgttaaccatcttttac 29699187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 592 - 664
Target Start/End: Original strand, 50231531 - 50231603
Alignment:
Q  592 tagccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctc 664  Q
    ||||||||||||||||||||||||||||| |||| ||||||| ||||||| ||||||||||||||||| ||||    
T  50231531 tagccaattataaaataacacgtggattactaatccatgtcaataatcgttcccgttaaccctctttttcctc 50231603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 592 - 660
Target Start/End: Original strand, 8528219 - 8528287
Alignment:
Q  592 tagccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctctttta 660  Q
    ||||||||||||||||||||||||||||| |||| ||||||| | |||||||| |||||||||||||||    
T  8528219 tagccaattataaaataacacgtggattactaatccatgtcaatgatcgtccctgttaaccctctttta 8528287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 592 - 693
Target Start/End: Original strand, 9041223 - 9041327
Alignment:
Q  592 tagccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctctgttatccaaagat---actcacaaaa 688  Q
    |||||||||||||||||| ||||| |||  |||| ||||||| |||||||  ||||||||||||||||||||| ||||  || ||||   ||||||||||    
T  9041223 tagccaattataaaataatacgtgaattgctaatccatgtcattaatcgtttccgttaaccctcttttacctccgttaatcatagatcaaactcacaaaa 9041322  T
Q  689 aacta 693  Q
    |||||    
T  9041323 aacta 9041327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 605 - 669
Target Start/End: Complemental strand, 20133102 - 20133038
Alignment:
Q  605 aataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctctgtta 669  Q
    |||||||||| ||||| |||| |||||||| |||||||| |||||||||||||||||||| ||||    
T  20133102 aataacacgtagattactaatccatgtcaccaatcgtcctcgttaaccctcttttacctccgtta 20133038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 611 - 663
Target Start/End: Complemental strand, 43575262 - 43575210
Alignment:
Q  611 acgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacct 663  Q
    |||||||||| |||| ||||||| ||||||||||| |||||||||||||||||    
T  43575262 acgtggattactaatccatgtcagtaatcgtccccattaaccctcttttacct 43575210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 599 - 669
Target Start/End: Original strand, 14245889 - 14245959
Alignment:
Q  599 ttataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctctgtta 669  Q
    |||||||||||||| | ||||| | ||  ||||||||||||||||| ||||||| |||||||| |||||||    
T  14245889 ttataaaataacacatagattacttatcgatgtcactaatcgtcccagttaaccttcttttacatctgtta 14245959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 546 - 593
Target Start/End: Complemental strand, 24162719 - 24162672
Alignment:
Q  546 gggttgaacttttctttcaaaaaatacccttaattttaaatataaata 593  Q
    |||||| ||||||||||| || |||||||||||||||||||| |||||    
T  24162719 gggttggacttttctttccaagaatacccttaattttaaatacaaata 24162672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 546 - 593
Target Start/End: Complemental strand, 43577230 - 43577183
Alignment:
Q  546 gggttgaacttttctttcaaaaaatacccttaattttaaatataaata 593  Q
    |||||| ||||||||||||||||||||||| |||||| |||| |||||    
T  43577230 gggttggacttttctttcaaaaaataccctcaattttcaatacaaata 43577183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 546 - 593
Target Start/End: Original strand, 50231398 - 50231445
Alignment:
Q  546 gggttgaacttttctttcaaaaaatacccttaattttaaatataaata 593  Q
    |||||||| ||||||||  ||||||||||||||||||||||| |||||    
T  50231398 gggttgaaattttcttttcaaaaatacccttaattttaaatacaaata 50231445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 592 - 658
Target Start/End: Original strand, 49265943 - 49266009
Alignment:
Q  592 tagccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttt 658  Q
    |||| |||||||||||||| |||| |||| ||||   |||||||||| || ||||||||||||||||    
T  49265943 tagctaattataaaataacgcgtgaattactaatcagtgtcactaattgttcccgttaaccctcttt 49266009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 592 - 625
Target Start/End: Complemental strand, 9046420 - 9046387
Alignment:
Q  592 tagccaattataaaataacacgtggattagtaat 625  Q
    ||||||||||||||||||||||||||||| ||||    
T  9046420 tagccaattataaaataacacgtggattactaat 9046387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 6e-27; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 547 - 704
Target Start/End: Complemental strand, 44973148 - 44972992
Alignment:
Q  547 ggttgaacttttctttcaaaaaatacccttaattttaaatataaatagccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccg 646  Q
    ||||| ||||||||||| ||||||||||||||||||||||| |||||| |||||||||||||||      ||||||||| ||| ||||||||  ||||||    
T  44973148 ggttggacttttctttctaaaaatacccttaattttaaatacaaatagtcaattataaaataac------attagtaatccatctcactaattttccccg 44973055  T
Q  647 ttaaccctcttttacctctgttatccaaagat---actcacaaaaaacta--acacaacaaaa 704  Q
    |||||||| |||||||||  ||| ||||||||   | |||||||||||||  |||||||||||    
T  44973054 ttaacccttttttacctccattaaccaaagatcaaattcacaaaaaactagcacacaacaaaa 44972992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 596 - 669
Target Start/End: Complemental strand, 35193507 - 35193434
Alignment:
Q  596 caattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctctgtta 669  Q
    |||||||||||||||| |||||||| |||| |||||||||||||||||||||||||||||||||||||| ||||    
T  35193507 caattataaaataacatgtggattactaatccatgtcactaatcgtccccgttaaccctcttttacctccgtta 35193434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 592 - 669
Target Start/End: Original strand, 309848 - 309925
Alignment:
Q  592 tagccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctctgtta 669  Q
    |||||||||||||||||||| |||||||| |||| |||||||||||||||||||||||| | ||||||||||| ||||    
T  309848 tagccaattataaaataacatgtggattactaatccatgtcactaatcgtccccgttaaacttcttttacctccgtta 309925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 596 - 749
Target Start/End: Original strand, 7061867 - 7062025
Alignment:
Q  596 caattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctctgttatccaaagat---actcacaaaaaact 692  Q
    ||||||||||||||||| ||||||| |||||||| ||||||||||||| |||||| ||||||||||||| |||||||| | ||   ||||||||||||||    
T  7061867 caattataaaataacacatggattactaattcatatcactaatcgtcctcgttaa-cctcttttacctccgttatccacatatcaaactcacaaaaaact 7061965  T
Q  693 a--acacaacaaaatttcatgtta-cnnnnnnncaaccgcttttatgttgtacatctgtg 749  Q
    |  ||| |||||||  |||||||| |       |||||| ||||||||||||||||||||    
T  7061966 agcacaaaacaaaaactcatgttacctttttatcaaccgattttatgttgtacatctgtg 7062025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 596 - 669
Target Start/End: Original strand, 43528444 - 43528517
Alignment:
Q  596 caattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctctgtta 669  Q
    |||||||||||||||| ||| |||| |||| |||||||||||||||| ||||||||||||||||||||| ||||    
T  43528444 caattataaaataacatgtgaattactaatccatgtcactaatcgtctccgttaaccctcttttacctccgtta 43528517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 592 - 663
Target Start/End: Complemental strand, 44539602 - 44539531
Alignment:
Q  592 tagccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacct 663  Q
    ||||||||||||||||||||||||||||| |||||||||||| |||| ||| | ||||||| ||||||||||    
T  44539602 tagccaattataaaataacacgtggattactaattcatgtcattaattgtcacagttaaccttcttttacct 44539531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 592 - 669
Target Start/End: Original strand, 13594515 - 13594592
Alignment:
Q  592 tagccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctctgtta 669  Q
    |||| ||||||||||||||| |||||||| |||| ||||| |||||||||| || |||||||||||||||||| ||||    
T  13594515 tagctaattataaaataacatgtggattactaatccatgtaactaatcgtctccattaaccctcttttacctccgtta 13594592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 546 - 593
Target Start/End: Complemental strand, 19901656 - 19901609
Alignment:
Q  546 gggttgaacttttctttcaaaaaatacccttaattttaaatataaata 593  Q
    |||||| ||||||||||| ||||||||||||||||||||||| |||||    
T  19901656 gggttggacttttctttccaaaaatacccttaattttaaataaaaata 19901609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 592 - 643
Target Start/End: Complemental strand, 25048013 - 25047962
Alignment:
Q  592 tagccaattataaaataacacgtggattagtaattcatgtcactaatcgtcc 643  Q
    ||||||||||||||||||||| ||||||| ||||  ||||||||||||||||    
T  25048013 tagccaattataaaataacacatggattactaatgtatgtcactaatcgtcc 25047962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 546 - 582
Target Start/End: Complemental strand, 44539738 - 44539702
Alignment:
Q  546 gggttgaacttttctttcaaaaaatacccttaatttt 582  Q
    |||||||||||||||||| ||||||||||||||||||    
T  44539738 gggttgaacttttctttccaaaaatacccttaatttt 44539702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 546 - 593
Target Start/End: Original strand, 7061734 - 7061781
Alignment:
Q  546 gggttgaacttttctttcaaaaaatacccttaattttaaatataaata 593  Q
    |||||||||||||||||  |||||||||||| |||||||||| |||||    
T  7061734 gggttgaacttttcttttcaaaaatacccttgattttaaatacaaata 7061781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 546 - 593
Target Start/End: Original strand, 21956532 - 21956579
Alignment:
Q  546 gggttgaacttttctttcaaaaaatacccttaattttaaatataaata 593  Q
    |||||| ||||||||||  ||||||||||||||||||||||| |||||    
T  21956532 gggttggacttttcttttcaaaaatacccttaattttaaatacaaata 21956579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 539 - 593
Target Start/End: Complemental strand, 8063290 - 8063236
Alignment:
Q  539 cattttcgggttgaacttttctttcaaaaaatacccttaattttaaatataaata 593  Q
    |||||| || ||||| ||||||||||||||||||||| |||||| |||| |||||    
T  8063290 catttttggattgaatttttctttcaaaaaataccctcaattttcaatacaaata 8063236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 611 - 653
Target Start/End: Original strand, 27339513 - 27339555
Alignment:
Q  611 acgtggattagtaattcatgtcactaatcgtccccgttaaccc 653  Q
    |||||||||| ||||||||||||||||||||| | ||||||||    
T  27339513 acgtggattactaattcatgtcactaatcgtctctgttaaccc 27339555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 540 - 582
Target Start/End: Original strand, 43528298 - 43528340
Alignment:
Q  540 attttcgggttgaacttttctttcaaaaaatacccttaatttt 582  Q
    ||||| |||||| ||||||||||| ||||||||||||||||||    
T  43528298 atttttgggttggacttttctttccaaaaatacccttaatttt 43528340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0066 (Bit Score: 59; Significance: 1e-24; HSPs: 2)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 594 - 699
Target Start/End: Original strand, 56467 - 56575
Alignment:
Q  594 gccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctctgttatccaaagat---actcacaaaaaa 690  Q
    ||||||||||||||||||||||||||| |||| ||||||||||| |||| |||||||||||||||||||| ||||| ||| | ||   ||||||||||||    
T  56467 gccaattataaaataacacgtggattattaatccatgtcactaaacgtctccgttaaccctcttttacctttgttaaccacatatcaaactcacaaaaaa 56566  T
Q  691 ctaacacaa 699  Q
    ||| |||||    
T  56567 ctagcacaa 56575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0066; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 546 - 587
Target Start/End: Original strand, 56333 - 56374
Alignment:
Q  546 gggttgaacttttctttcaaaaaatacccttaattttaaata 587  Q
    |||||| ||||||||||| |||||||||||||||| ||||||    
T  56333 gggttggacttttctttccaaaaatacccttaattataaata 56374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 5e-24; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 592 - 661
Target Start/End: Original strand, 24432233 - 24432302
Alignment:
Q  592 tagccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttac 661  Q
    |||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||    
T  24432233 tagccaattataaaataacatgtggaatactaattcatgtcactaatcgtccccgttaaccctcttttac 24432302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 596 - 669
Target Start/End: Complemental strand, 5592765 - 5592692
Alignment:
Q  596 caattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctctgtta 669  Q
    ||||||||||||||||||||||||| |||| ||||||||||||||| | |||| |||| |||||||||||||||    
T  5592765 caattataaaataacacgtggattactaatccatgtcactaatcgttctcgttgacccacttttacctctgtta 5592692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 547 - 593
Target Start/End: Original strand, 32889059 - 32889105
Alignment:
Q  547 ggttgaacttttctttcaaaaaatacccttaattttaaatataaata 593  Q
    ||||||||||||||||| ||||||||||||||||||||||| |||||    
T  32889059 ggttgaacttttctttccaaaaatacccttaattttaaatacaaata 32889105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 539 - 582
Target Start/End: Original strand, 26528069 - 26528112
Alignment:
Q  539 cattttcgggttgaacttttctttcaaaaaatacccttaatttt 582  Q
    |||||| |||||||||||||||||| ||||||||||||||||||    
T  26528069 catttttgggttgaacttttctttccaaaaatacccttaatttt 26528112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 546 - 586
Target Start/End: Original strand, 32889177 - 32889217
Alignment:
Q  546 gggttgaacttttctttcaaaaaatacccttaattttaaat 586  Q
    |||||||||||||||||  ||||||||||||||||||||||    
T  32889177 gggttgaacttttcttttcaaaaatacccttaattttaaat 32889217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 592 - 669
Target Start/End: Complemental strand, 3567 - 3490
Alignment:
Q  592 tagccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctctgtta 669  Q
    |||| |||||||||||||||||||||||| |||| ||| |||||||||||||  ||||||||||||||||||| ||||    
T  3567 tagctaattataaaataacacgtggattactaatccatatcactaatcgtccatgttaaccctcttttacctccgtta 3490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 595 - 715
Target Start/End: Complemental strand, 17305 - 17180
Alignment:
Q  595 ccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctctgttatccaaagat---actcacaaaaaac 691  Q
    ||||||||||||||| || ||||||| |||| |||||||||||| ||| |||||||||||||||||  || |||| ||| ||||   || ||||||||||    
T  17305 ccaattataaaataatacatggattactaatccatgtcactaattgtctccgttaaccctcttttagttccgttaaccatagatcaaacacacaaaaaac 17206  T
Q  692 ta--acacaacaaaatttcatgttac 715  Q
    ||  ||| ||||||| ||||||||||    
T  17205 tatcacaaaacaaaaattcatgttac 17180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 539 - 593
Target Start/End: Original strand, 48321 - 48376
Alignment:
Q  539 cattttcgggttgaacttttctttcaaaa-aatacccttaattttaaatataaata 593  Q
    |||||| |||||| |||||||||| |||| |||||||||||||||||||| |||||    
T  48321 catttttgggttggacttttcttttaaaaaaatacccttaattttaaatacaaata 48376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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