View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0568_low_10 (Length: 490)
Name: NF0568_low_10
Description: NF0568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0568_low_10 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 441; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 28 - 480
Target Start/End: Complemental strand, 55956559 - 55956107
Alignment:
| Q |
28 |
caccaggaccatggaagcttcctttaataggaaacttgcatcaactagcattaggaggatcacttccacatcataaacttcgagatctatccaacaaata |
127 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
55956559 |
caccaggaccatggaagcttcctttaataggaaacttgcatcaactagcattaggaggatcacttccacatcatactcttcgagatctatccaacaaata |
55956460 |
T |
|
| Q |
128 |
tggacctcttatgcatcttcagcttggtgaaatttctgcagtggttgtttcatctcctgatttggccaaagagataatgaagacacatgatctttctttt |
227 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
55956459 |
tggacctcttatgtatcttcagcttggtgaaatttctgcagtggttgtttcatctcctgatttggccaaagagataatgaagacacatgatctttctttt |
55956360 |
T |
|
| Q |
228 |
gttcagaggccagaactcctagctcctaaaatattatcatatgattcaacagatattgtttatgctccatacggtgattattggagacagatgaggaaaa |
327 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
55956359 |
gttcagaggccagaactcctagctcctaaaatattatcatatgattcaacagatattgtttatgctccatacggtgattattggagacagatgaggaaaa |
55956260 |
T |
|
| Q |
328 |
tatgtacatcacagcttcttagtgctaaaagggttcattatttttcttccattagagaagaagaggtgcaaaagctcatacaatcaattcaagtttcact |
427 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
55956259 |
tatgtacatcacagcttcttagtgctaaaagggttcattatttttcttccattagagaagaagaggtgcaaaagctcatacaatcaattcaagtttcact |
55956160 |
T |
|
| Q |
428 |
ttcactaccacttaatgttactaaaacagctttttctttggtaagtacctttg |
480 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
55956159 |
ttcactaccacttaatgttactaaaacagctttttctttggtaagtacctttg |
55956107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 86 - 480
Target Start/End: Complemental strand, 55959948 - 55959551
Alignment:
| Q |
86 |
atcacttccacatcataaacttcgagatctatccaacaaatatggacctcttatgcatcttcagcttggtgaaatttctgcagtggttgtttcatctcct |
185 |
Q |
| |
|
|||||||||||| |||| ||||||| |||| || || |||||||||||||||||||||||||||| |||||||||||| || | ||||| ||||| ||| |
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|
| T |
55959948 |
atcacttccacaccatacacttcgaaatctgtcaaa--aatatggacctcttatgcatcttcagctaggtgaaatttctacaatagttgtctcatcccct |
55959851 |
T |
|
| Q |
186 |
gatttggccaaagagataatgaagacacatgatctttcttttgttcagaggccagaactcctagctcctaaaatattatcatatgattcaacagatattg |
285 |
Q |
| |
|
||||| |||||||||||| ||||||||| ||||||| |||||||||| |||||| ||||| | |||||||| |||||| | ||||||||||| | ||||| |
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|
| T |
55959850 |
gatttagccaaagagatattgaagacacgtgatcttgcttttgttcaaaggccaaaactcattgctcctaatatattagcctatgattcaactggtattg |
55959751 |
T |
|
| Q |
286 |
tttatgctccatacggtgattattggagacagatgaggaaaatatgtacatcacagcttc-----ttagtgctaaaagggttcattatttttcttccatt |
380 |
Q |
| |
|
| | ||||||||||||||||||||||||||| ||||||||||||||||||||| | |||| ||||||||||||||||||| | ||||||||||||| |
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|
| T |
55959750 |
tctttgctccatacggtgattattggagacaaatgaggaaaatatgtacatcagaacttcttatattagtgctaaaagggttcaatctttttcttccatt |
55959651 |
T |
|
| Q |
381 |
agagaagaagaggtgcaaaagctcatacaatcaattcaagtttcactttcactaccacttaatgttactaaaacagctttttctttggtaagtacctttg |
480 |
Q |
| |
|
|||||||| ||||| ||||||| |||||||| ||||||| ||||||||||||||||||| |||||||||||| |||||| ||||||||||||||||||| |
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|
| T |
55959650 |
agagaagatgaggtagaaaagcttatacaatccattcaaggttcactttcactaccacttgatgttactaaaatagctttctctttggtaagtacctttg |
55959551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 28 - 411
Target Start/End: Complemental strand, 12426889 - 12426506
Alignment:
| Q |
28 |
caccaggaccatggaagcttcctttaataggaaacttgcatcaactagcattaggaggatcacttccacatcataaacttcgagatctatccaacaaata |
127 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||||||| |||| |||| ||||||||||| ||||||| |
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|
| T |
12426889 |
caccaggaccatggaagcttcctctaataggaaacttgcatcaactagcattagcaggaaaacttccacaccatacacttggagatctatcccacaaata |
12426790 |
T |
|
| Q |
128 |
tggacctcttatgcatcttcagcttggtgaaatttctgcagtggttgtttcatctcctgatttggccaaagagataatgaagacacatgatctttctttt |
227 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||||| | ||||||||||||||||||||||||||||||||| |
|
|
| T |
12426789 |
tggacctcttatgcatcttcagcttggtgaaatttctacagtggttgtttcatcccctaatttgactaaagagataatgaagacacatgatctttctttt |
12426690 |
T |
|
| Q |
228 |
gttcagaggccagaactcctagctcctaaaatattatcatatgattcaacagatattgtttatgctccatacggtgattattggagacagatgaggaaaa |
327 |
Q |
| |
|
|||||||||||| || |||||||||| || |||||| ||||||| |||| ||||||| | | |||| |||| ||||||||||||||||||||||| |||| |
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|
| T |
12426689 |
gttcagaggccacaattcctagctccaaatatattaacatatgaatcaaaagatattatctttgcttcatatggtgattattggagacagatgagaaaaa |
12426590 |
T |
|
| Q |
328 |
tatgtacatcacagcttcttagtgctaaaagggttcattatttttcttccattagagaagaagaggtgcaaaagctcatacaat |
411 |
Q |
| |
|
||||||||||| | |||||||||||||||||||| || | ||||||||||||||||||||| | |||| ||||| | ||||||| |
|
|
| T |
12426589 |
tatgtacatcagaacttcttagtgctaaaagggtccaatctttttcttccattagagaagatggggtggaaaagatgatacaat |
12426506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 28 - 411
Target Start/End: Original strand, 12265931 - 12266314
Alignment:
| Q |
28 |
caccaggaccatggaagcttcctttaataggaaacttgcatcaactagcattaggaggatcacttccacatcataaacttcgagatctatccaacaaata |
127 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||| | ||||| | |||| ||||| ||| |||| | || |||||||||| ||||||| |
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|
| T |
12265931 |
caccaggaccatggaagcttcctctaataggaaacttgcatcaaattgcatttgcaggaaaacttctacaccatacaattagagatctatcacacaaata |
12266030 |
T |
|
| Q |
128 |
tggacctcttatgcatcttcagcttggtgaaatttctgcagtggttgtttcatctcctgatttggccaaagagataatgaagacacatgatctttctttt |
227 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| ||||| ||||||| ||||||| |||||||||||||||||| |
|
|
| T |
12266031 |
tggacctcttatgcatcttcagcttggtgaaatttctgccgtggttgtttcatcccctaatttgaccaaagaaataatgaggacacatgatctttctttc |
12266130 |
T |
|
| Q |
228 |
gttcagaggccagaactcctagctcctaaaatattatcatatgattcaacagatattgtttatg-ctccatacggtgattattggagacagatgaggaaa |
326 |
Q |
| |
|
||| |||||||| | |||| ||||| || ||| || | ||||| |||| ||||||| | ||| || |||| ||||||||||||||||||||||| ||| |
|
|
| T |
12266131 |
gttgagaggccacgattccttgctccgaatataataacctatgaatcaaaagatatt-ctcatgtcttcatatggtgattattggagacagatgagaaaa |
12266229 |
T |
|
| Q |
327 |
atatgtacatcacagcttcttagtgctaaaagggttcattatttttcttccattagagaagaagaggtgcaaaagctcatacaat |
411 |
Q |
| |
|
|||||||||||| | |||||||||||||||||||| || | ||||||||||||||||||||| | |||| ||||| | ||||||| |
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|
| T |
12266230 |
atatgtacatcagaacttcttagtgctaaaagggtccaatctttttcttccattagagaagatggggtggaaaagatgatacaat |
12266314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 3e-21; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 60 - 388
Target Start/End: Original strand, 7140425 - 7140753
Alignment:
| Q |
60 |
aacttgcatcaactagcattaggaggatcacttccacatcataaacttcgagatctatccaacaaatatggacctcttatgcatcttcagcttggtgaaa |
159 |
Q |
| |
|
||||| |||||||||||||| | |||| ||||||||||||| |||| | | || || | ||||||||||| | ||||| || || || ||||||| |
|
|
| T |
7140425 |
aacttacatcaactagcatttgcaggaaaacttccacatcatgggcttcaaaaactttctcaaaaatatggaccattaatgcacctacaactaggtgaaa |
7140524 |
T |
|
| Q |
160 |
tttctgcagtggttgtttcatctcctgatttggccaaagagataatgaagacacatgatctttcttttgttcagaggccagaactcctagctcctaaaat |
259 |
Q |
| |
|
|| ||||||||||||||| || | |||| ||||| || ||||||| ||||||||| || ||||| | | |||||| |||| | ||| |||||| |
|
|
| T |
7140525 |
ttaatgcagtggttgtttcttcctcaaatttagccaaggaagtaatgaaaacacatgatgttgtttttgctaataggccaaaacttccttctcttaaaat |
7140624 |
T |
|
| Q |
260 |
attatcatatgattcaacagatattgtttatgctccatacggtgattattggagacagatgaggaaaatatgtacatcacagcttcttagtgctaaaagg |
359 |
Q |
| |
|
||| | |||| || | ||||||||| | | ||||||| ||||||||||||||||| ||||| ||||||||| | | || |||| |||||||||||| |
|
|
| T |
7140625 |
tttagcctatggttttaaagatattgtattttctccatatggtgattattggagacaaatgagaaaaatatgtgtcttagagattctaagtgctaaaagg |
7140724 |
T |
|
| Q |
360 |
gttcattatttttcttccattagagaaga |
388 |
Q |
| |
|
||||| | |||||||| |||||||||||| |
|
|
| T |
7140725 |
gttcaatctttttcttacattagagaaga |
7140753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 123 - 388
Target Start/End: Original strand, 7152319 - 7152584
Alignment:
| Q |
123 |
aaatatggacctcttatgcatcttcagcttggtgaaatttctgcagtggttgtttcatctcctgatttggccaaagagataatgaagacacatgatcttt |
222 |
Q |
| |
|
|||||||||||| | ||||| | || ||||||||||||||| | ||| |||| ||||||||| | ||||| || || |||||||| ||||||||| | |
|
|
| T |
7152319 |
aaatatggacctttaatgcacatacaacttggtgaaatttctactgtgattgtatcatctcctaaattggcaaaggaaataatgaaaacacatgatgctg |
7152418 |
T |
|
| Q |
223 |
cttttgttcagaggccagaactcctagctcctaaaatattatcatatgattcaacagatattgtttatgctccatacggtgattattggagacagatgag |
322 |
Q |
| |
|
|||||| | | |||||| |||| || | ||| |||| | | |||| ||||| ||||||||| | | ||||||| ||||||| ||||||||| ||||| |
|
|
| T |
7152419 |
cttttgctaataggccaaaacttctttcccctgaaattatggcctatggttcaaaagatattgtattttctccatatggtgatttttggagacaaatgag |
7152518 |
T |
|
| Q |
323 |
gaaaatatgtacatcacagcttcttagtgctaaaagggttcattatttttcttccattagagaaga |
388 |
Q |
| |
|
||||||||| | | ||||| ||||||||||||||||| | |||||||| ||||||||||| |
|
|
| T |
7152519 |
aaaaatatgtgtctttgaacttctaagtgctaaaagggttcaatctttttcttatattagagaaga |
7152584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 267 - 333
Target Start/End: Original strand, 7130269 - 7130335
Alignment:
| Q |
267 |
tatgattcaacagatattgtttatgctccatacggtgattattggagacagatgaggaaaatatgta |
333 |
Q |
| |
|
|||| ||||| |||||||| | | ||||||| ||||||||||||||||| ||||| |||||||||| |
|
|
| T |
7130269 |
tatggttcaaaagatattgcattttctccatatggtgattattggagacaaatgagaaaaatatgta |
7130335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 124 - 220
Target Start/End: Complemental strand, 22858553 - 22858457
Alignment:
| Q |
124 |
aatatggacctcttatgcatcttcagcttggtgaaatttct-gcagtggttgtttcatctcctgatttggccaaagagataatgaagacacatgatct |
220 |
Q |
| |
|
||||||||||||| ||||| | ||||| |||||| ||||| ||| | ||||||||||||| ||| |||| |||||||||||||| ||||||||||| |
|
|
| T |
22858553 |
aatatggacctctcatgcacatgcagctaggtgaactttcttgca-tagttgtttcatctcaagatatggcaaaagagataatgaaaacacatgatct |
22858457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 124 - 220
Target Start/End: Original strand, 22901735 - 22901831
Alignment:
| Q |
124 |
aatatggacctcttatgcatcttcagcttggtgaaatttct-gcagtggttgtttcatctcctgatttggccaaagagataatgaagacacatgatct |
220 |
Q |
| |
|
|||||||| |||| |||||| | ||||||||||| ||||| ||| | ||||||||||||| || |||| |||||||||||||| ||||||||||| |
|
|
| T |
22901735 |
aatatggatctctaatgcatatgcagcttggtgagctttcttgca-tagttgtttcatctcaagaaatggcaaaagagataatgaaaacacatgatct |
22901831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 124 - 164
Target Start/End: Complemental strand, 22907171 - 22907131
Alignment:
| Q |
124 |
aatatggacctcttatgcatcttcagcttggtgaaatttct |
164 |
Q |
| |
|
|||||||||||||||||||| | | |||||||||||||||| |
|
|
| T |
22907171 |
aatatggacctcttatgcatatgcggcttggtgaaatttct |
22907131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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