View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0568_low_11 (Length: 487)
Name: NF0568_low_11
Description: NF0568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0568_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 30 - 472
Target Start/End: Original strand, 38038432 - 38038875
Alignment:
| Q |
30 |
gtgactggcactgcattcactgctcttgtaaattttgtggatcctatcaagaaggaagtgaaaatcccgctgctggatgtgtctttcgtgcatgtccttc |
129 |
Q |
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| T |
38038432 |
gtgactggcactgcattcactgctcttgtaaattttgtggatcctatcaacaaggaagtgaaaatcccgctactggatgtgtctttcgtgcatgtccttc |
38038531 |
T |
|
| Q |
130 |
atgcagaaccagatgtattttctcttcttctttttcttatactaattatatatctcctcttcattaattaactcaatattcttttctcaataatgtattt |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38038532 |
atgcagaaccagatgtattttctcttcttctttttcttatactaattatatatctcctcttcattaattaactcaatattcttttctcaataatgtattt |
38038631 |
T |
|
| Q |
230 |
tctttccccatcaaaaagaaacaaatcttttttgataaataatgtgttaacatcaaacttagcatcatgtgtgctctatagttgaaagattaataaacta |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
38038632 |
tctttccccatcaaaaagaaacaaatcttttttgataaataatgtgttaacatcaaacttagcatcatgtgtgctctatagttgaaagataaataaacta |
38038731 |
T |
|
| Q |
330 |
aactttatatctctcatgtagatcatataaactgtgttgaggccaacagtgatgagttcaatcgtgaatctttttgtggaaaaagatgtcaacaggtatg |
429 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38038732 |
aactttatatctctcatgtagatcatataaactgtgttgaggccaacagtgatgagttcaatcgtgaatctttttgtggaaaaagatgtcaacaggtatg |
38038831 |
T |
|
| Q |
430 |
ata-nnnnnnnncatattttaaaatcttgaacattgttcttaat |
472 |
Q |
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||| |||||||||||||||||||||||||||||||| |
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| T |
38038832 |
atatttttttttcatattttaaaatcttgaacattgttcttaat |
38038875 |
T |
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