View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0568_low_12 (Length: 468)
Name: NF0568_low_12
Description: NF0568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0568_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 96; Significance: 7e-47; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 266 - 453
Target Start/End: Complemental strand, 33418906 - 33418723
Alignment:
| Q |
266 |
ccctatatttcccgcctcaaagtccactcttttcctttacttcaaactcaaaaacaaagtcttcatgttttcttaaccgagacttttcattaaaatggan |
365 |
Q |
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| T |
33418906 |
ccctatatttcccgcctcaaagccctctctttccctttacttcaaactcacaa-----gtcttcgtgttttgttaaccgagacttttcattaaaatggat |
33418812 |
T |
|
| Q |
366 |
nnnnnngg-agtcttgctttcctattacattgactttgaatatattgcatcacaacctaccaattactattattagcattaatgttcat |
453 |
Q |
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| T |
33418811 |
ttttttgggagtcttgctttcctgttggattgactttgaatatattgcatcacaacctaccgattactattactagcattaatgttcat |
33418723 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 30 - 108
Target Start/End: Complemental strand, 33419212 - 33419134
Alignment:
| Q |
30 |
gatttggttttgagtgaggacttagactttgttcataagtttagaggggaaaagaggagagttttggaaaaacattgaa |
108 |
Q |
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| T |
33419212 |
gatttggttttgagtgaggacttagactttgttcataagtttagaggggaaaagaggagaattttggaaaaacattgaa |
33419134 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 392 - 450
Target Start/End: Complemental strand, 6839815 - 6839757
Alignment:
| Q |
392 |
cattgactttgaatatattgcatcacaacctaccaattactattattagcattaatgtt |
450 |
Q |
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| T |
6839815 |
cattgactttcaatatattgcatcacatcctgccaattactagtattagcgttcatgtt |
6839757 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 392 - 439
Target Start/End: Original strand, 29456497 - 29456544
Alignment:
| Q |
392 |
cattgactttgaatatattgcatcacaacctaccaattactattatta |
439 |
Q |
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| T |
29456497 |
cattgactttgaatatattgcatcacatcttgccaattactagtatta |
29456544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 383 - 422
Target Start/End: Original strand, 26730977 - 26731016
Alignment:
| Q |
383 |
ttcctattacattgactttgaatatattgcatcacaacct |
422 |
Q |
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|||||||||||||||||||||||||| |||| |||||||| |
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| T |
26730977 |
ttcctattacattgactttgaatatactgcaccacaacct |
26731016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 382 - 418
Target Start/End: Complemental strand, 19176716 - 19176680
Alignment:
| Q |
382 |
tttcctattacattgactttgaatatattgcatcaca |
418 |
Q |
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||||||||| || |||||||||||||||||||||||| |
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| T |
19176716 |
tttcctattgcactgactttgaatatattgcatcaca |
19176680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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