View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0568_low_13 (Length: 435)
Name: NF0568_low_13
Description: NF0568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0568_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 94 - 427
Target Start/End: Complemental strand, 5443497 - 5443149
Alignment:
| Q |
94 |
acaagctacataattcaaattcaacataagtgtgagagtttggattgggatggagttatagtgaatcaagtctaaactaatatattgagtacta------ |
187 |
Q |
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| T |
5443497 |
acaagctacataattcaaattcaacataagtgtgagagtttggattgggatggagttatagtgaatcaagtctaaactaatatattgagtactataataa |
5443398 |
T |
|
| Q |
188 |
---agatctagttctacacggtaatcaaatttagtcaataaatcggtaaacatgattgtgtttgtcatcttatcatattgaagcataaaagacttatagc |
284 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || |
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| T |
5443397 |
ttaagatctagttctacacggtaatcaaatttaatcaataaatcggtaaacatgattgtgtttgtcatcttatcatattgaagcatcaaagacttatggc |
5443298 |
T |
|
| Q |
285 |
gtcgtacataatagtacctttttattttcaatactaaattgatgacaattcattcatattca------tattgtaatataattgtttaaaggagggccaa |
378 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |
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| T |
5443297 |
gtcgtacataatagtacctttttattttcaatactaaattgatgacaattcattcatattcatattcatattgtaatataattgtttaaaggagggctaa |
5443198 |
T |
|
| Q |
379 |
ctgggatttccttttgttaaaatgcacatcctgattttttcttcatctc |
427 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
5443197 |
ctgggatttccttttgttaaaatgcacatcctgattttttcttcttctc |
5443149 |
T |
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