View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0568_low_15 (Length: 414)
Name: NF0568_low_15
Description: NF0568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0568_low_15 |
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| [»] scaffold0586 (1 HSPs) |
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Alignment Details
Target: scaffold0586 (Bit Score: 201; Significance: 1e-109; HSPs: 1)
Name: scaffold0586
Description:
Target: scaffold0586; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 76 - 321
Target Start/End: Complemental strand, 9573 - 9325
Alignment:
| Q |
76 |
cagagaaaaatttagcgggaatgacaagggaaaatatggtattttattcaagatcatgggtttccatttcctgg-aataaaactttcccaagctatctca |
174 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
9573 |
cagagaaaaatttagcgggaatggcaagggaaaatatggtattttattcaagatcatgggtttccatttcctgggaataaaactttcccaagctatctca |
9474 |
T |
|
| Q |
175 |
tgggaataaaagggatggaa-aaagggtgaacatggggaagaaatgggg-aaaacgtgggtagatggcttttctgggaaaattgcattcctggacatatt |
272 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| |||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
9473 |
tgggaataaaagggatggaacaaagggtgaacgtggggaagaaatgggggaaaacgtgggtagatggctttcctgggaaaattgcattcctggacatatt |
9374 |
T |
|
| Q |
273 |
tgtgtggttcccacttatcaagcaaaggaatgtttaattccaaccttag |
321 |
Q |
| |
|
|||||||||||||| || ||| ||||||||||||||||||||||||||| |
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|
| T |
9373 |
tgtgtggttcccacctaccaaacaaaggaatgtttaattccaaccttag |
9325 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 74 - 321
Target Start/End: Complemental strand, 10637605 - 10637355
Alignment:
| Q |
74 |
agcagagaaaaatttagcgggaatgacaagggaaaatatggtattttattcaagatcatgggtttccatttcctgg-aataaaactttcccaagctatct |
172 |
Q |
| |
|
||||||||||||||||||||||||| |||||| ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
10637605 |
agcagagaaaaatttagcgggaatggcaagggcaaatatggtattttattcaagttcatgggtttccatttcctgggaataaaactttcccaagctatct |
10637506 |
T |
|
| Q |
173 |
catgggaataaaagggatggaaaaa-gggtgaacatggggaagaaatgggg-aaaacgtgggtagatggcttttctgggaaaattgcattcctggacata |
270 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| |||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
10637505 |
catgggaataaaagggatggaaaaaagggtgaacgtggggaagaaatgggggaaaacgtgggtagatggctttcctgggaaaattgcattcctggacata |
10637406 |
T |
|
| Q |
271 |
tttgtgtggttcccacttatcaagcaaaggaatgtttaattccaaccttag |
321 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
10637405 |
tttgtgtggttcccacttaccaaacaaaggaatgtttaattccaaccttag |
10637355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 74 - 321
Target Start/End: Original strand, 32717989 - 32718239
Alignment:
| Q |
74 |
agcagagaaaaatttagcgggaatgacaagggaaaatatggtattttattcaagatcatgggtttccatttcctgg-aataaaactttcccaagctatct |
172 |
Q |
| |
|
||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |
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|
| T |
32717989 |
agcagagaaaaatttagcgggaatggcaagggcaaatatggtattttattcaagatcatgggtttccatttcctgggaataaaactttcccaagccatct |
32718088 |
T |
|
| Q |
173 |
catgggaataaaagggatggaaaaa-gggtgaacatggggaagaaatgggg-aaaacgtgggtagatggcttttctgggaaaattgcattcctggacata |
270 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| |||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |||||| |
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|
| T |
32718089 |
catgggaataaaagggatggaaaaaagggtgaacgtggggaagaaatgggggaaaacgtgggtagatggctttcctgggaaaattgcattcctagacata |
32718188 |
T |
|
| Q |
271 |
tttgtgtggttcccacttatcaagcaaaggaatgtttaattccaaccttag |
321 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||||||||||||||||||||| |
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|
| T |
32718189 |
tttgtgtggttcccacttaccaaacaaaggaatgtttaattccaaccttag |
32718239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 74 - 321
Target Start/End: Complemental strand, 22893760 - 22893511
Alignment:
| Q |
74 |
agcagagaaaaatttagcgggaatgacaagggaaaatatggtattttattcaagatcatgggtttccatttcct-ggaataaaactttcccaagctatct |
172 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
22893760 |
agcagagaaaaatttagcgggaatggcaagggaaaatatggtattttattcaagatcatgggtttccatttcctgggaataaaactttcccaagctatct |
22893661 |
T |
|
| Q |
173 |
catgggaataaaagggatgg-aaaaagggtgaacatggggaagaaat-ggggaaaacgtgggtagatggcttttctgggaaaattgcattcctggacata |
270 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| |||||||||||| ||||||||| ||||||||||||||| |||| ||||||||||||| |||||| |
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|
| T |
22893660 |
catgggaataaaagggatggaaaaaagggtgaacgtggggaagaaatgggggaaaacatgggtagatggctttcatggg-aaattgcattccttgacata |
22893562 |
T |
|
| Q |
271 |
tttgtgtggttcccacttatcaagcaaaggaatgtttaattccaaccttag |
321 |
Q |
| |
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||||||||||||||||||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
22893561 |
tttgtgtggttcccacttaccaaacaaaggaatgtttaattccaaccttag |
22893511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 186
Target Start/End: Complemental strand, 44306032 - 44305971
Alignment:
| Q |
126 |
agatcatgggtttccatttcct-ggaataaaactttcccaagctatctcatgggaataaaag |
186 |
Q |
| |
|
||||||||||||| ||||||| ||| ||||| |||||||||||||| ||||||||||||| |
|
|
| T |
44306032 |
agatcatgggtttatatttcctaggactaaaagtttcccaagctatcagatgggaataaaag |
44305971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 186; Significance: 1e-100; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 74 - 321
Target Start/End: Complemental strand, 19701142 - 19700894
Alignment:
| Q |
74 |
agcagagaaaaatttagcgggaatgacaagggaaaatatggtattttattcaagatcatgggtttccatttcctgg-aataaaactttcccaagctatct |
172 |
Q |
| |
|
||||||||||||||||| | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
19701142 |
agcagagaaaaatttagtgagaatggcaagggaaaatatggtattttattcaagatcatgggtttccatttcctgggaataaaactttcccaagctatct |
19701043 |
T |
|
| Q |
173 |
catgggaataaaagggatggaaaaa-gggtgaacatggggaagaaatggggaaaacgtgggtagatggcttttctgggaaaattgcattcctggacatat |
271 |
Q |
| |
|
| ||||||||||||||||||||||| |||||||| ||||||||||||||| ||||||||||||||||||||| |||||||||||| |||||||||||||| |
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|
| T |
19701042 |
cttgggaataaaagggatggaaaaaagggtgaacgtggggaagaaatggg-aaaacgtgggtagatggctttcctgggaaaattgtattcctggacatat |
19700944 |
T |
|
| Q |
272 |
ttgtgtggttcccacttatcaagcaaaggaatgtttaattccaaccttag |
321 |
Q |
| |
|
|||||||||||||||||| ||| |||||||||||||||||||| |||||| |
|
|
| T |
19700943 |
ttgtgtggttcccacttaccaaacaaaggaatgtttaattccagccttag |
19700894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 148 - 186
Target Start/End: Complemental strand, 21481309 - 21481271
Alignment:
| Q |
148 |
ggaataaaactttcccaagctatctcatgggaataaaag |
186 |
Q |
| |
|
||||||||||||||||| ||||||||| ||||||||||| |
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|
| T |
21481309 |
ggaataaaactttcccatgctatctcaggggaataaaag |
21481271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 94 - 321
Target Start/End: Original strand, 15762160 - 15762388
Alignment:
| Q |
94 |
gaatgacaagggaaaatatggtattttattcaagatcatgggtttccatttcctgg-aataaaactttcccaagctatctcatgggaataaaagggatgg |
192 |
Q |
| |
|
||||||||||| ||| ||||||||||||| |||||||||| |||||||| | ||| |||||| |||||||||||||| ||||||||||| |||||||| |
|
|
| T |
15762160 |
gaatgacaaggacaaaaatggtattttattgaagatcatgg-tttccattccatgggaataaatctttcccaagctatttcatgggaatagaagggatga |
15762258 |
T |
|
| Q |
193 |
aaaa-agggtgaacatggggaagaaatggggaaaacgtgggtagatggcttttctgggaaaattgcattcctggacatatttgtgtggttcccacttatc |
291 |
Q |
| |
|
|||| ||| ||||| ||||| | || ||||| ||||||||| || |||| ||||||||| || |||||| | |||||||||||||| ||||| || | |
|
|
| T |
15762259 |
aaaataggttgaacgtgggggaaaatgggggagaacgtgggtgtattactttcctgggaaaaatgtattcctaggcatatttgtgtggtacccacctacc |
15762358 |
T |
|
| Q |
292 |
aagcaaaggaatgtttaattccaaccttag |
321 |
Q |
| |
|
|| ||||||||| || |||||| |||||| |
|
|
| T |
15762359 |
aaacaaaggaatattcgattccagccttag |
15762388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 88 - 285
Target Start/End: Original strand, 5672181 - 5672380
Alignment:
| Q |
88 |
tagcgggaatgacaagggaaaatatggtattttattcaagatcatgggtttccatttcctggaataaaactttcccaagctatctcatgggaataaaagg |
187 |
Q |
| |
|
|||||||||||||||||| ||| ||||| ||||||| ||||||||||||||| ||| | ||||| ||||||||||||||||| ||||||||||| || | |
|
|
| T |
5672181 |
tagcgggaatgacaagggcaaaaatggttttttattgaagatcatgggtttcaattcctgggaatgaaactttcccaagctatttcatgggaatagaatg |
5672280 |
T |
|
| Q |
188 |
gatggaaaaagggt-gaacatggggaagaaatggggaa-aacgtgggtagatggcttttctgggaaaattgcattcctggacatatttgtgtggttccca |
285 |
Q |
| |
|
|||||||||||||| |||| ||||| |||||||| | ||||||||| | |||| |||| |||| || ||||||| ||| ||||||||||||||| |
|
|
| T |
5672281 |
gatggaaaaagggttgaacgtggggggaaaatgggggagaacgtgggtttactactttcctggaaaaaatgtattcctgagcatttttgtgtggttccca |
5672380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 66; Significance: 5e-29; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 88 - 201
Target Start/End: Original strand, 13342625 - 13342738
Alignment:
| Q |
88 |
tagcgggaatgacaagggaaaatatggtattttattcaagatcatgggtttccatttcctggaataaaactttcccaagctatctcatgggaataaaagg |
187 |
Q |
| |
|
|||||||||||||||||| ||| ||||| ||||||| ||||||||||||||| ||| | ||||| ||||||||||||||||| ||||||||||| || | |
|
|
| T |
13342625 |
tagcgggaatgacaagggcaaaaatggttttttattgaagatcatgggtttcaattcctgggaatgaaactttcccaagctatttcatgggaatagaatg |
13342724 |
T |
|
| Q |
188 |
gatggaaaaagggt |
201 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
13342725 |
gatggaaaaagggt |
13342738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 88 - 201
Target Start/End: Original strand, 13331710 - 13331823
Alignment:
| Q |
88 |
tagcgggaatgacaagggaaaatatggtattttattcaagatcatgggtttccatttcctggaataaaactttcccaagctatctcatgggaataaaagg |
187 |
Q |
| |
|
||||||||||| |||||| ||| ||||| ||||||| ||||||||||||||| ||| | ||||| ||||||||||||||||| ||||||||||| || | |
|
|
| T |
13331710 |
tagcgggaatggcaagggcaaaaatggttttttattgaagatcatgggtttcaattcctgggaatgaaactttcccaagctatttcatgggaatagaatg |
13331809 |
T |
|
| Q |
188 |
gatggaaaaagggt |
201 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
13331810 |
gatggaaaaagggt |
13331823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 126 - 186
Target Start/End: Complemental strand, 6049815 - 6049754
Alignment:
| Q |
126 |
agatcatgggtttccatttcctgg-aataaaactttcccaagctatctcatgggaataaaag |
186 |
Q |
| |
|
||||||||||||| |||||||||| ||||||| |||||||||||||| ||||||||||||| |
|
|
| T |
6049815 |
agatcatgggtttacatttcctgggaataaaagtttcccaagctatcagatgggaataaaag |
6049754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 126 - 186
Target Start/End: Original strand, 13893901 - 13893962
Alignment:
| Q |
126 |
agatcatgggtttccatttcctgg-aataaaactttcccaagctatctcatgggaataaaag |
186 |
Q |
| |
|
||||||||||||| ||||| |||| ||||||| |||||||||||||| ||||||||||||| |
|
|
| T |
13893901 |
agatcatgggtttacattttctgggaataaaagtttcccaagctatcagatgggaataaaag |
13893962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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