View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0568_low_20 (Length: 394)
Name: NF0568_low_20
Description: NF0568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0568_low_20 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 282; Significance: 1e-158; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 78 - 384
Target Start/End: Complemental strand, 38812122 - 38811808
Alignment:
| Q |
78 |
taaatcaagtaactcctccttgaacaagttttggttgaggatgctctcaaaatccaagagttcctctaacaatgtttcatcccaatactcaaaatctaga |
177 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38812122 |
taaatcaagtaactcctccttgaacaagttttggttgaggatgctctcaaaatccaagagttcctctaacaatgtttcatcccaatactcaaaatctaga |
38812023 |
T |
|
| Q |
178 |
acttgttcaccaagctctgatttaatccatgatggtggtggtgatgccgatgataatgatggcgttgaattggatgaagaagatgacttagaagaattat |
277 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38812022 |
acttgttcaccaagctctgatttaatccatgatggtggtggtgatgccgatgataatgatggcgttgaattggatgaagaagatgacttagaagaattat |
38811923 |
T |
|
| Q |
278 |
aaaccacattgcaaggaaaatgttcatgtggaaagttgagaatggccaaagaacctctcatttc--------catgatcataagcccttgctttgcagct |
369 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| |
|
|
| T |
38811922 |
aaaccacattgcaaggaaaatgttcatgtggaaagttgagaatggccaaagaacctctcatttcaaaagcagcatgatcataagcccttgttttgcagct |
38811823 |
T |
|
| Q |
370 |
tccttactagtatta |
384 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
38811822 |
tccttactagtatta |
38811808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 78 - 341
Target Start/End: Complemental strand, 38810037 - 38809786
Alignment:
| Q |
78 |
taaatcaagtaactcctccttgaacaagttttggttgaggatgctctcaaaatccaagagttcctctaacaatgtttcatcccaatactcaaaatctaga |
177 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||| ||| |||||||| |||||||||| |||| | |
|
|
| T |
38810037 |
taaatcaagtaactcctacttgaacaagtcctggttgatgatgctctcaaaatccaagagttcctctaataatttttcatccaaatactcaaactctata |
38809938 |
T |
|
| Q |
178 |
acttgttcaccaagctctgatttaatccatgatggtggtggtgatgccgatgataatgatggcgttgaattggatgaagaagatgacttagaagaattat |
277 |
Q |
| |
|
||||||||| |||| || ||||||| | ||| |||||| |||||| ||||||||||| |||||||| | |||||||| |||| |
|
|
| T |
38809937 |
acttgttcaacaagttccgatttaacctttga---------------agatgatgatgatgaggttgaattggaggaagaagacggcttagaagggttat |
38809853 |
T |
|
| Q |
278 |
aaaccacattgcaaggaa---aatgttcatgtggaaagttgagaatggccaaagaacctctcatttc |
341 |
Q |
| |
|
| |||||| ||||||||| |||||||||| |||||||| ||||| || |||||||||||||||| |
|
|
| T |
38809852 |
ataccacactgcaaggaaaataatgttcatgaggaaagttaagaatagctgaagaacctctcatttc |
38809786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 82 - 202
Target Start/End: Complemental strand, 38822967 - 38822847
Alignment:
| Q |
82 |
tcaagtaactcctccttgaacaagttttggttgaggatgctctcaaaatccaagagttcctctaacaatgtttcatcccaatactcaaaatctagaactt |
181 |
Q |
| |
|
||||||||||||| ||||||| |||| | |||| | | ||||| |||||||||||||||||| ||| |||||||| |||||||||| |||| || || |
|
|
| T |
38822967 |
tcaagtaactcctacttgaaccagttgttattgatggtattctcaggatccaagagttcctctaataatttttcatccaaatactcaaactctataattt |
38822868 |
T |
|
| Q |
182 |
gttcaccaagctctgatttaa |
202 |
Q |
| |
|
||||||||||||| ||||||| |
|
|
| T |
38822867 |
gttcaccaagctccgatttaa |
38822847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 202 times since January 2019
Visitors: 3831