View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0568_low_22 (Length: 369)
Name: NF0568_low_22
Description: NF0568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0568_low_22 |
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| [»] scaffold0154 (2 HSPs) |
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| [»] scaffold0189 (1 HSPs) |
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Alignment Details
Target: scaffold0154 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: scaffold0154
Description:
Target: scaffold0154; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 359
Target Start/End: Original strand, 22829 - 23196
Alignment:
| Q |
1 |
ttgaaagagttttttctagctggcacctaacaccgtgaaggcccaaatgctcccaatgactttacacattcacacttgaaatttgaaaatagttaccaaa |
100 |
Q |
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| T |
22829 |
ttgaaagagttttttctagctggcacctaacaccgtgaatgcccaaatgctcccaatgactttacacattcacacttgaaatttgaaaatagttaccaac |
22928 |
T |
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| Q |
101 |
gctgtcaatggaatgtccataattaaaaggaaaaaggaaggaatgtcaacctaaaccaagtgat-------------ctttttacccattgacaaaatat |
187 |
Q |
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| T |
22929 |
gctgtcaatggaatgtccataattaaaaggaaaaaggaaggaatgtcaacctaaaccaagtgattcatttttactagctttttacccattgacaaaatat |
23028 |
T |
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| Q |
188 |
ttgtcaacaaagagttaatgcaaaaagaataagctttgaatatttgacaccaaattaaccaacagaaaagttaataaacctcannnnnnnnnnnnnngtg |
287 |
Q |
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| T |
23029 |
ttgtcaacaaagagttaatgcaaaaagca----ctttggatatttgacaccaaattaacctacagaaaagttaataaacctca-ctttttcttttttgtg |
23123 |
T |
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| Q |
288 |
ccatcaagcaatcatgtgttgaatgat-atgttcacacattagactcgtaaaacatcccatctcttagtataa |
359 |
Q |
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| T |
23124 |
ccatcaagcaatcatgtgttgaatgatcatgttcacacattagactcgtaaaacttctcatctcttagtataa |
23196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0154; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 16 - 270
Target Start/End: Original strand, 13024 - 13287
Alignment:
| Q |
16 |
ctagctggcacctaacaccgtgaaggcccaaatgctcccaatgactttacacattcacactt--gaaatttgaaaatagttaccaaagctgtcaatggaa |
113 |
Q |
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| T |
13024 |
ctagctggcacataacaccgtcaaggctcaggtgctgccaataactttacactttcacacttttgaaatttgaaaattgtaaccaatgctgtcaaaggaa |
13123 |
T |
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| Q |
114 |
tgtccataattaaaaggaaaaaggaaggaatgtcaacc-taaaccaagtg----------atctttttaccc-attgacaaaatatttgtcaacaaagag |
201 |
Q |
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| T |
13124 |
t--ccataattaaaaggaaaaa--aagttatgtcaaccctaaacgtggttcatttttactaactttttaccccatcgacaaa-tatttgacaacaaagag |
13218 |
T |
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| Q |
202 |
ttaatgcaaaaagaataagctttgaatatttgacaccaaattaaccaacagaaaagttaataaacctca |
270 |
Q |
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| T |
13219 |
ttgatgcaaaaagaataagctttgcatatttgacagtcaattaaccaacagaaaagttcataaacctca |
13287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0189 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0189
Description:
Target: scaffold0189; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 166 - 255
Target Start/End: Complemental strand, 2102 - 2013
Alignment:
| Q |
166 |
tttttacccattgacaaaatatttgtcaacaaagagttaatgcaaaaagaataagctttgaatatttgacaccaaattaaccaacagaaa |
255 |
Q |
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| T |
2102 |
tttttacccattgactaaatatatgtcaacgaagagttaaagccagaagaataaactttggatatttgacactgaattaaccaacagaaa |
2013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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