View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0568_low_24 (Length: 353)

Name: NF0568_low_24
Description: NF0568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0568_low_24
NF0568_low_24
[»] chr5 (13 HSPs)
chr5 (1-110)||(29568376-29568485)
chr5 (2-109)||(29569708-29569815)
chr5 (1-110)||(29168239-29168348)
chr5 (1-109)||(1758133-1758241)
chr5 (2-110)||(27918634-27918742)
chr5 (1-109)||(29425281-29425389)
chr5 (187-257)||(29568559-29568629)
chr5 (187-255)||(1757999-1758067)
chr5 (187-257)||(29569867-29569937)
chr5 (211-257)||(29166883-29166929)
chr5 (315-353)||(29568681-29568719)
chr5 (214-255)||(29425195-29425236)
chr5 (225-257)||(27918541-27918573)
[»] chr3 (2 HSPs)
chr3 (2-110)||(25518468-25518576)
chr3 (187-244)||(25518343-25518400)
[»] chr4 (8 HSPs)
chr4 (1-109)||(18986085-18986193)
chr4 (1-109)||(27521342-27521450)
chr4 (1-104)||(27461990-27462093)
chr4 (1-104)||(27482129-27482232)
chr4 (187-255)||(27461851-27461919)
chr4 (187-255)||(27481990-27482058)
chr4 (187-255)||(27521516-27521584)
chr4 (187-255)||(18985951-18986019)


Alignment Details
Target: chr5 (Bit Score: 102; Significance: 1e-50; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 29568376 - 29568485
Alignment:
Q  1 taagagcattcccacggagactgaaaggatgtgtaatggcggagaagccattacgggggagattgcttgcgtcgaaagaatgcttcttggatgatagttg 100  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  29568376 taagagcattcccacggagactgaaaggaagtgtaatggcggagaagccattacgggtgagattgcttgcgtcgaaagaatgcttcttggatgatagttg 29568475  T
Q  101 gtgagcagaa 110  Q
    ||||||||||    
T  29568476 gtgagcagaa 29568485  T

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Target: chr5; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 2 - 109
Target Start/End: Original strand, 29569708 - 29569815
Alignment:
Q  2 aagagcattcccacggagactgaaaggatgtgtaatggcggagaagccattacgggggagattgcttgcgtcgaaagaatgcttcttggatgatagttgg 101  Q
    ||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||    
T  29569708 aagagcattgccacggagactgaaaggaagtgtaatggcggagaagccattacgggtgagattgcttgcgtcggaagaatgcttcttggatgatagttgg 29569807  T
Q  102 tgagcaga 109  Q
    ||||||||    
T  29569808 tgagcaga 29569815  T

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Target: chr5; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 29168348 - 29168239
Alignment:
Q  1 taagagcattcccacggagactgaaaggatgtgtaatggcggagaagccattacgggggagattgcttgcgtcgaaagaatgcttcttggatgatagttg 100  Q
    ||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| |||||||||||||| |||||||||||| ||||||||||||||    
T  29168348 taagagcattcccacggagactgaaaggaagtgtaatggtggagaagccattacgggtgagattgcttgcgttgaaagaatgcttattggatgatagttg 29168249  T
Q  101 gtgagcagaa 110  Q
    ||||||||||    
T  29168248 gtgagcagaa 29168239  T

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Target: chr5; HSP #4
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 1758241 - 1758133
Alignment:
Q  1 taagagcattcccacggagactgaaaggatgtgtaatggcggagaagccattacgggggagattgcttgcgtcgaaagaatgcttcttggatgatagttg 100  Q
    ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||  |||| ||||    
T  1758241 taagagcattcccgcggagactgaaaggaagtgtaatggcggagaagccattacgggtgagattgcttgcgtcaaaagaatgcttcttgagtgatggttg 1758142  T
Q  101 gtgagcaga 109  Q
    |||||||||    
T  1758141 gtgagcaga 1758133  T

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Target: chr5; HSP #5
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 2 - 110
Target Start/End: Complemental strand, 27918742 - 27918634
Alignment:
Q  2 aagagcattcccacggagactgaaaggatgtgtaatggcggagaagccattacgggggagattgcttgcgtcgaaagaatgcttcttggatgatagttgg 101  Q
    |||||| || |||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |  ||||||||||||||||||||||||||    
T  27918742 aagagcgttgccacggagactgaaaggaagtgtaatggcggagaagccattacgggtgagattgcttgcgccagaagaatgcttcttggatgatagttgg 27918643  T
Q  102 tgagcagaa 110  Q
    |||||||||    
T  27918642 tgagcagaa 27918634  T

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Target: chr5; HSP #6
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 29425389 - 29425281
Alignment:
Q  1 taagagcattcccacggagactgaaaggatgtgtaatggcggagaagccattacgggggagattgcttgcgtcgaaagaatgcttcttggatgatagttg 100  Q
    ||||||||||||||||||||||||||||| |||||||||| ||||||||||||||   ||||||||||||||| ||||||||||||||||||||| ||||    
T  29425389 taagagcattcccacggagactgaaaggaagtgtaatggcagagaagccattacgcatgagattgcttgcgtcaaaagaatgcttcttggatgatggttg 29425290  T
Q  101 gtgagcaga 109  Q
    |||||||||    
T  29425289 gtgagcaga 29425281  T

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Target: chr5; HSP #7
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 187 - 257
Target Start/End: Original strand, 29568559 - 29568629
Alignment:
Q  187 ttggaataatcatggattgtttctgtttgtgagggatcaacatggattcttgttgaatctgtagatcactc 257  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29568559 ttggaataatcatggattgtttctgtttgtgagggatcaacatggattcttgttgaatctgtagatcactc 29568629  T

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Target: chr5; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 187 - 255
Target Start/End: Complemental strand, 1758067 - 1757999
Alignment:
Q  187 ttggaataatcatggattgtttctgtttgtgagggatcaacatggattcttgttgaatctgtagatcac 255  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  1758067 ttggaataatcatggattgtttctgtttgtgagggatcaacatggattcttgttgaatctgtaaatcac 1757999  T

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Target: chr5; HSP #9
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 187 - 257
Target Start/End: Original strand, 29569867 - 29569937
Alignment:
Q  187 ttggaataatcatggattgtttctgtttgtgagggatcaacatggattcttgttgaatctgtagatcactc 257  Q
    |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |||||    
T  29569867 ttggaataatcatggattgtttgtgtttgtgagggatcaaaatggattcttgttgaatctgtagaccactc 29569937  T

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Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 211 - 257
Target Start/End: Complemental strand, 29166929 - 29166883
Alignment:
Q  211 gtttgtgagggatcaacatggattcttgttgaatctgtagatcactc 257  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||    
T  29166929 gtttgtgagggatcatcatggattcttgttgaatctgtagatcactc 29166883  T

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Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 315 - 353
Target Start/End: Original strand, 29568681 - 29568719
Alignment:
Q  315 gttgtaaagtaagtgtgagtggcaaagttataaaaatgt 353  Q
    |||||||||||||||||||||||||||||||||||||||    
T  29568681 gttgtaaagtaagtgtgagtggcaaagttataaaaatgt 29568719  T

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Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 214 - 255
Target Start/End: Complemental strand, 29425236 - 29425195
Alignment:
Q  214 tgtgagggatcaacatggattcttgttgaatctgtagatcac 255  Q
    |||||||||||||||||||||||||||||||||||| |||||    
T  29425236 tgtgagggatcaacatggattcttgttgaatctgtaaatcac 29425195  T

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Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 257
Target Start/End: Complemental strand, 27918573 - 27918541
Alignment:
Q  225 aacatggattcttgttgaatctgtagatcactc 257  Q
    |||||||||||||||||||||||||||||||||    
T  27918573 aacatggattcttgttgaatctgtagatcactc 27918541  T

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Target: chr3 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 2 - 110
Target Start/End: Complemental strand, 25518576 - 25518468
Alignment:
Q  2 aagagcattcccacggagactgaaaggatgtgtaatggcggagaagccattacgggggagattgcttgcgtcgaaagaatgcttcttggatgatagttgg 101  Q
    ||||||||| ||||| |||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||    
T  25518576 aagagcattaccacgaagactgaaaggaagtgtaatggcggagaagccattacgggtgagattgcttgcgtcgaaagaatgcttcttggatgatggttgg 25518477  T
Q  102 tgagcagaa 110  Q
    |||| ||||    
T  25518476 tgaggagaa 25518468  T

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Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 187 - 244
Target Start/End: Complemental strand, 25518400 - 25518343
Alignment:
Q  187 ttggaataatcatggattgtttctgtttgtgagggatcaacatggattcttgttgaat 244  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25518400 ttggaataatcatggattgtttctgtttgtgagggatcaacatggattcttgttgaat 25518343  T

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Target: chr4 (Bit Score: 81; Significance: 5e-38; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 18986193 - 18986085
Alignment:
Q  1 taagagcattcccacggagactgaaaggatgtgtaatggcggagaagccattacgggggagattgcttgcgtcgaaagaatgcttcttggatgatagttg 100  Q
    |||||| |||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||  ||||    
T  18986193 taagagtattcccacggagactgaaagaaagtgtaatggcggagaagccattacgggtgagattgcttgcgtcaaaagaatgcttcttggatgacggttg 18986094  T
Q  101 gtgagcaga 109  Q
    |||||||||    
T  18986093 gtgagcaga 18986085  T

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Target: chr4; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 27521342 - 27521450
Alignment:
Q  1 taagagcattcccacggagactgaaaggatgtgtaatggcggagaagccattacgggggagattgcttgcgtcgaaagaatgcttcttggatgatagttg 100  Q
    ||||||||||||| ||||||||||||||| |||||||||| |||||||||||||||| ||||||||||||||| ||||||||||||||||||||| ||||    
T  27521342 taagagcattcccgcggagactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaatgcttcttggatgatggttg 27521441  T
Q  101 gtgagcaga 109  Q
    ||| |||||    
T  27521442 gtgggcaga 27521450  T

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Target: chr4; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 27462093 - 27461990
Alignment:
Q  1 taagagcattcccacggagactgaaaggatgtgtaatggcggagaagccattacgggggagattgcttgcgtcgaaagaatgcttcttggatgatagttg 100  Q
    |||||||||| |||||||||||||||||| |||||||||| |||||||||||||||| ||||||||||||||| ||||||||||||||||||||| ||||    
T  27462093 taagagcatttccacggagactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaatgcttcttggatgatggttg 27461994  T
Q  101 gtga 104  Q
    ||||    
T  27461993 gtga 27461990  T

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Target: chr4; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 27482232 - 27482129
Alignment:
Q  1 taagagcattcccacggagactgaaaggatgtgtaatggcggagaagccattacgggggagattgcttgcgtcgaaagaatgcttcttggatgatagttg 100  Q
    ||||||||||||| |||||||||||||||  ||||||||| |||||||||||||||| ||||||||||||||| ||||||||||||||||||||| ||||    
T  27482232 taagagcattcccgcggagactgaaaggaattgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaatgcttcttggatgatggttg 27482133  T
Q  101 gtga 104  Q
    ||||    
T  27482132 gtga 27482129  T

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Target: chr4; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 187 - 255
Target Start/End: Complemental strand, 27461919 - 27461851
Alignment:
Q  187 ttggaataatcatggattgtttctgtttgtgagggatcaacatggattcttgttgaatctgtagatcac 255  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  27461919 ttggaataatcatggattgtttctgtttgtgagggatcaacatggattcttgttgaatctgtaaatcac 27461851  T

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Target: chr4; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 187 - 255
Target Start/End: Complemental strand, 27482058 - 27481990
Alignment:
Q  187 ttggaataatcatggattgtttctgtttgtgagggatcaacatggattcttgttgaatctgtagatcac 255  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  27482058 ttggaataatcatggattgtttctgtttgtgagggatcaacatggattcttgttgaatctgtaaatcac 27481990  T

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Target: chr4; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 187 - 255
Target Start/End: Original strand, 27521516 - 27521584
Alignment:
Q  187 ttggaataatcatggattgtttctgtttgtgagggatcaacatggattcttgttgaatctgtagatcac 255  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  27521516 ttggaataatcatggattgtttctgtttgtgagggatcaacatggattcttgttgaatctgtaaatcac 27521584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 187 - 255
Target Start/End: Complemental strand, 18986019 - 18985951
Alignment:
Q  187 ttggaataatcatggattgtttctgtttgtgagggatcaacatggattcttgttgaatctgtagatcac 255  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |||||    
T  18986019 ttggaataatcatggattgtttctgtttgtgagggatcaccatggattcttgttgaatttgtaaatcac 18985951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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