View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0568_low_25 (Length: 342)
Name: NF0568_low_25
Description: NF0568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0568_low_25 |
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Alignment Details
Target: chr5 (Bit Score: 292; Significance: 1e-164; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 30 - 333
Target Start/End: Original strand, 37078697 - 37079000
Alignment:
| Q |
30 |
attggcccatagctttgttttgtttctcattgattgaaaataggctcagtccactctctttacagaataccttcaaatatgattttaggaagtgttaata |
129 |
Q |
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| T |
37078697 |
attggcccatagctttgttttgtttctcattgattgaaaataggctcagtccactctctttacagaataccttcaaatatgattttaggaagtgttaata |
37078796 |
T |
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| Q |
130 |
aatgatttaacatggtgcttgccaaacacaatattcaatacttggtttattgatcaactttacctttcatgtatttcatattcaaggtttttagctatag |
229 |
Q |
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| T |
37078797 |
aatgatttaacatggtgcttgccaaacacaatattcaatacttggtttattgatcaactttacctttcatgtatttcatattcaaggttgttagctatag |
37078896 |
T |
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| Q |
230 |
tgatgagggtttagagagtgcactgcacattgtgttctgtttcatgttgagaaaaagaaaaacacttaggatgcgtttgtttcatggatactaaacatat |
329 |
Q |
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| T |
37078897 |
tgatgagggtttagagagtgcactgcacattttgttctgtttcatgttgagaaaaagaaaaacacttaggatgcatttgtttcatggatactaaacatat |
37078996 |
T |
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| Q |
330 |
tctt |
333 |
Q |
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|||| |
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| T |
37078997 |
tctt |
37079000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 43 - 208
Target Start/End: Original strand, 37064584 - 37064754
Alignment:
| Q |
43 |
tttgttttgtttctcattgattgaaaataggctcagtccactctctttacagaataccttcaaatatgat-------tttaggaagtgttaataaatgat |
135 |
Q |
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| T |
37064584 |
tttgttttgtttctcattgattgaaaataggctcattccaccat--ttccagaatacattcaattatgaaatgggaattgataaagttttaataaatgat |
37064681 |
T |
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| Q |
136 |
ttaacatggtgcttgccaaacacaatattcaatacttggtttattgatcaactttacctttcatgtatttcat |
208 |
Q |
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| T |
37064682 |
ttaacatggtgcttgcctaactcaattttcaatacttcgtttaattatctacccaaccttttatgtatttcat |
37064754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 124 - 284
Target Start/End: Original strand, 37068830 - 37068980
Alignment:
| Q |
124 |
ttaataaatgatttaacatggtgcttgccaaacacaatattcaatacttggtttattgatcaactttacctttcatgtatttcatattcaaggtttttag |
223 |
Q |
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||||||||||||| |||||||| | | | ||||| |||||||||||||| || | |||||||| | |||||||||||||||| | ||||| |||| |
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| T |
37068830 |
ttaataaatgattgaacatggtacctac-aaacaaaatattcaatacttaattcaatgatcaacccgaactttcatgtatttcatttg--aggttgttag |
37068926 |
T |
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| Q |
224 |
ctatagtgatgagggtttagagagtgcactgcacattgtgttctgtttcatgttgagaaaa |
284 |
Q |
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| T |
37068927 |
ctatagtgatgaggatttagag-------tgcacattgtttactgtttcatgtcgagaaaa |
37068980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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