View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0568_low_26 (Length: 335)
Name: NF0568_low_26
Description: NF0568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0568_low_26 |
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Alignment Details
Target: chr8 (Bit Score: 142; Significance: 2e-74; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 45104373 - 45104563
Alignment:
| Q |
1 |
ctagttgttcgatccgatcccaatctggtaaccttagatccaacgtaactcattctttccccttaattannnnnnnnnnnnnnctattctctttcaacat |
100 |
Q |
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| T |
45104373 |
ctagttgttcgatccgatcccaatctggtaaccttagatccaacgtaactcattcttaccccttaattaatatatat------ctattctctttcaacat |
45104466 |
T |
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| Q |
101 |
caaatttcaccgactaattcctaacaacatcaagggttagctagcaacacaagttgggatattaagtgaccttgatgatttcctgggaaataaaaaa |
197 |
Q |
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| T |
45104467 |
catatttcaccgactaattcctaacaacatcaagggttagctagcaacacaagttgggatattaagtgaccttgatgatttcctgggaaataaaaaa |
45104563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 190 - 288
Target Start/End: Complemental strand, 8059425 - 8059327
Alignment:
| Q |
190 |
ataaaaaacaatagttgatttaagtgcgtcgaacaagactcaaacagttcaaccatcaacgaaatcataacctgtattctccaaaccatcggtgctagt |
288 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
8059425 |
ataaaaaacaatagttgatttaagtgcgtcgaacaagactcaaacagttcaaccatcaacgaaatcacaacctgtattctccaaaccatcggtgctagt |
8059327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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