View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0568_low_29 (Length: 311)
Name: NF0568_low_29
Description: NF0568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0568_low_29 |
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Alignment Details
Target: chr5 (Bit Score: 257; Significance: 1e-143; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 32 - 308
Target Start/End: Original strand, 13646257 - 13646533
Alignment:
| Q |
32 |
cacacaacattaattttacatatgcaagaaagttataggtcacaaaattaagatttttcgaaaaatggaaacacaacctaaggaaaaatcttctccacat |
131 |
Q |
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| T |
13646257 |
cacacaacattaattttacatatgcaagaaagttataggtcacaaaattaagattttttgaaaaatggaaacacaacctaaggaaaaatcttctccacat |
13646356 |
T |
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| Q |
132 |
gtgctaatcttcccatgtccagcacaaggccatgtaaattcaatgctaaagctagctgaacttcttgcaattcaaaacatttacataactttcctcaaca |
231 |
Q |
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| T |
13646357 |
gtgctaatcttcccatgtccagcacaaggccatgtaaattcaatgctaaagctagctgaacttcttgcaattcaaaacatctacatcactttcctcaaca |
13646456 |
T |
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| Q |
232 |
ctgaatacatccataaccgactcatacaattcaatgatgatattcaagctcttttagaatgttaccctaagcttcaa |
308 |
Q |
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| T |
13646457 |
ccaaatacatccataaccgactcatacaattcaatgatgatattcaagctcttttagaatgttaccctaagcttcaa |
13646533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 95 - 308
Target Start/End: Original strand, 13656646 - 13656859
Alignment:
| Q |
95 |
aatggaaacacaacctaaggaaaaatcttctccacatgtgctaatcttcccatgtccagcacaaggccatgtaaattcaatgctaaagctagctgaactt |
194 |
Q |
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| T |
13656646 |
aatggatatacaacccaagaaaaaatccttaccacatgtgctaatcttcccatgtccagcacaaggccatgtaaatccaatgctaaagctagctgaactt |
13656745 |
T |
|
| Q |
195 |
cttgcaattcaaaacatttacataactttcctcaacactgaatacatccataaccgactcatacaattcaatgatgatattcaagctcttttagaatgtt |
294 |
Q |
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| T |
13656746 |
cttgcaattcaaaacatctacatcacttttctcaacaccaaatacatccataaccgactcatacaattcaatgatgatattcaagctcttttagaatgtt |
13656845 |
T |
|
| Q |
295 |
accctaagcttcaa |
308 |
Q |
| |
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|||||||||||||| |
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| T |
13656846 |
accctaagcttcaa |
13656859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 129 - 256
Target Start/End: Original strand, 13651432 - 13651559
Alignment:
| Q |
129 |
catgtgctaatcttcccatgtccagcacaaggccatgtaaattcaatgctaaagctagctgaacttcttgcaattcaaaacatttacataactttcctca |
228 |
Q |
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|||||| |||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| ||||||||| || ||||||| ||||| | |
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| T |
13651432 |
catgtgttaatcttcccatgtccagcacaaggccatgtaaacacaatgctcaagctagctgaacttcttttaattcaaaatcttcacataacattcctaa |
13651531 |
T |
|
| Q |
229 |
acactgaatacatccataaccgactcat |
256 |
Q |
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| T |
13651532 |
acactgaatacatccacaacagactcat |
13651559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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